Sequence detailsbmy_06898 (Coding sequence)

Part of scaffold_259 (SequenceType object (1))

For more information consult the page for scaffold_259 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNRNP200ENSTTRG00000004983 (Bottlenosed dolphin)

Gene Details

small nuclear ribonucleoprotein 200kDa (U5)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004696, Bottlenosed dolphin)

Protein Percentage 99.67%
cDNA percentage 98.83%
Ka/Ks Ratio 0.03656 (Ka = 0.0017, Ks = 0.0458)

SNRNP200ENSBTAG00000000848 (Cow)

Gene Details

U5 small nuclear ribonucleoprotein 200 kDa helicase

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000001130, Cow)

Protein Percentage 99.39%
cDNA percentage 93.57%
Ka/Ks Ratio 0.00757 (Ka = 0.0028, Ks = 0.3762)

SNRNP200 (Minke Whale)

Gene Details

small nuclear ribonucleoprotein 200kDa (U5)

External Links

Gene match (Identifier: BACU017721, Minke Whale)

Protein Percentage 99.91%
cDNA percentage 99.36%
Ka/Ks Ratio 0.01622 (Ka = 0.0004, Ks = 0.0258)

Additional orthologs identified in other species via the OPTIC pipeline.

SNRNP200 (Human)   Snrnp200 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 6507 bp    Location:1190131..1217033   Strand:+
Raw sequence 
>bmy_06898
ATGGCGGATGTGACCGCTCGTAGCCTGCAGTACGAGTACAAGGCGAACTCGAATCTTGTCCTCCAAGCTGACCGCTCTCTCATTGACCGGACCCGCCGGGATGAACCCACAGGAGAGGTTCTGTCCCTGGTTGGGAAGCTGGAGGGCACCCGGATGGGAGATAAGGCTCAACGGACGAAACCACAGATGCAAGAGGAAAGAAGAGCCAAGCGAAGAAAGCGTGATGAGGACCGGCATGACATCAACAAGATGAAGGGTTATACTCTGCTCTCGGAGGGCATTGATGAGATGGTGGGCATCATCTACAAGCCCAAAACTAAAGAGACCCGGGAGACCTACGAAGTGCTGCTCAGCTTCATCCAGGCTGCACTTGGGGACCAGCCACGTGATATCCTTTGTGGGGCAGCTGATGAAGTTCTAGCTGTTTTAAAGAATGAAAAGCTTCGGGACAAGGAAAGGAGAAAGGAGATTGATCTGCTGCTGGGTCAGACAGATGATACAAGATACCATGTGTTAGTGAACCTGGGCAAAAAGATCACAGACTATGGTGGAGACAAGGAAATCCAGAATATGGATGACAACATTGATGAGACGTATGGTGTGAATGTACAGTTTGAGTCTGACGAGGAGGAAGGTGATGAAGATGTGTACGGGGAGGTTCGAGAAGAGGCATCGGACGACGACATGGAAGGGGACGAGGCGGTGGTGCGCTGCACCCTCTCGGCTAATCTTGTGGCCTCAGGGGAACTGATGAGTTCCAAGAAGAAGGATTTGCACCCTCGGGATATTGATGCCTTTTGGCTCCAGCGGCAGCTCAGTCGCTTCTATGATGATGCCATTGTGTCGCAGAAGAAGGCAGATGAAGTCTTGGAGATTTTGAAGACGGCCAGTGATGACCGGGAATGTGAGAACCAGCTGGTTCTGCTCCTTGGTTTCAACACTTTTGATTTTATTAAGGTGTTGCGGCAGCACAGGATGATGATTTTATACTGTACCTTGCTGGCCAGTGCACAGAGTGAAGCTGAAAAGGAAAGGATCATGGGAAAGATGGAAGCTGACCCAGAGCTGTCCAAGTTCCTCTACCAGCTCCACGAAACGGAGAAGGAGGATCTGATCCGGGAGGAGAGGTCTCGGAGAGAGCGAGTGCGTCAGTCCCGGATGGACACAGATCTGGAAACCATGGATCTGGACCAGGGTGGAGAGGCACTGGCTCCGCGACAGGTTCTGGACTTGGAGGACCTAGTTTTTACCCAGGGGAGCCACTTCATGGCCAACAAACGCTGTCAGCTTCCTGACGGATCCTTCCGTCGCCAGCGCAAGGGCTATGAAGAGGTGCATGTACCTGCTCTGAAGCCCAAGCCCTTCGGCTCTGAAGAACAACTTCTTCCAGTGGAGAAACTGCCCAAATATGCCCAGGCTGGATTTGAGGGCTTCAAAACACTGAATCGGATCCAGAGTAAGCTCTACCGTGCTGCTCTGGAGACGGATGAGAATCTGCTGCTCTGCGCTCCTACCGGTGCTGGTAAGACCAACGTGGCCCTGATGTGTATGCTCCGAGAGATAGGGAAGCACATTAACATGGATGGCACTATCAACGTGGATGACTTCAAGATCATCTACATCGCCCCCATGCGGTCTTTGGTGCAGGAGATGGTGGGCAGTTTTGGAAAGCGCCTGGCCACGTATGGCATCACTGTGGCAGAACTGACTGGAGACCACCAGCTGTGCAAGGAGGAGATCAGCGCCACTCAGATCATCGTCTGCACCCCTGAGAAGTGGGACATCATTACCCGCAAGGGTGGGGAGCGGACCTACACCCAGCTCGTGCGACTCATCATCCTGGATGAGATCCATCTTCTCCACGATGACAGAGGTCCTGTCTTAGAAGCGTTGGTGGCCAGGACCATCCGGAACATTGAGATGACCCAAGAGGATGTCCGACTCATCGGTCTTAGTGCCACCCTCCCCAACTATGAAGATGTGGCTACCTTTCTGCGTGTGGACCCTGCCAAGGGCCTCTTCTACTTCGACAACAGCTTCCGCCCAGTGCCTCTAGAACAGACTTACGTGGGCATTACGGAGAAAAAAGCTATCAAGCGTTTCCAGATCATGAATGAAATTGTCTATGAGAAAATCATGGAACATGCTGGAAAAAATCAGGTGCTGGTGTTTGTCCACTCCCGGAAGGAGACTGGGAAGACGGCCAGGGCCATCCGGGACATGTGCCTGGAGAAGGACACGCTGGGTCTGTTTCTGAGAGAGGGCTCGGCCTCCACAGAAGTCCTTCGGACAGAAGCCGAGCAGTGCAAGAACCTGGAGCTGAAGGATCTCCTGCCCTATGGCTTTGCTATTCATCACGCGGGCATGACCAGAGTTGACCGGACACTTGTAGAGGATCTTTTTGCTGATAAACACATTCAGGTTTTAGTTTCGACGGCAACCCTGGCTTGGGGTGTGAATCTCCCCGCGCATACCGTCATCATCAAAGGCACCCAGGTGTACAGTCCAGAGAAGGGGCGCTGGACAGAACTGGGGGCACTGGACATCCTGCAGATGCTGGGACGAGCAGGAAGACCTCAGTATGACACCAAGGGTGAAGGCATACTCATCACTTCTCATGGGGAGCTGCAGTACTACCTGTCCCTCCTCAATCAGCAGCTTCCTATTGAGAGCCAGATGGTATCAAAGCTGCCTGACATGCTCAACGCGGAAGTCGTGCTGGGGAACGTCCAGAACGCAAAGGATGCAGTGAACTGGCTGGGCTACGCCTACTTGTATATCCGAATGCTCCGATCCCCAACCCTCTATGGCATCTCTCATGATGACCTCAAGGGAGATCCCCTGCTGGACCAGCGCCGACTGGATCTGGTTCATACTGCTGCCTTGATGCTGGATAAGAACAATCTGGTCAAGTACGACAAGAAGACGGGCAACTTCCAGGTGACAGAACTCGGTCGTATAGCCAGCCACTACTACATCACCAATGATACGGTACAGACCTACAACCAGCTGCTGAAGCCCACCCTGAGTGAGATTGAGCTTTTCAGAGTCTTCTCATTGTCCTCAGAGTTCAAGAACATCACCGTGAGAGAAGAAGAGAAGCTGGAGCTGCAGAAGCTGCTGGAGAGGGTGCCCATCCCTGTAAAGGAGAGCATTGAGGAACCCAGTGCGAAGATCAATGTGCTTCTCCAAGCTTTCATCTCGCAACTGAAATTGGAGGGCTTTGCGTTGATGGCCGACATGGTATATGTTACCCAGTCGGCTGGCCGGTTGATGCGTGCCATCTTTGAAATTGTCCTGAACCGAGGCTGGGCGCAGCTTACAGACAAGACCCTGAACCTCTGCAAGATGATTGACAAACGCATGTGGCAGTCCATGTGTCCTCTGCGCCAGTTCCGGAAACTCCCTGAGGAAGTAGTGAAGAAGATCGAGAAGAAAAACTTCCCTTTTGAGCGTCTGTATGACCTGAATCACAATGAGATAGGGGAGCTTATCCGCATGCCCAAGATGGGGAAGACCATCCACAAATACGTCCACCTGTTCCCCAAGCTGGAGTTGTCGGTGCACCTGCAGCCTATCACGCGCTCCACGCTGAAGGTGGAGCTGACCATCACGCCCGACTTCCAGTGGGATGAAAAGGTCCATGGTTCATCAGAGGCGTTCTGGATTCTGGTGGAGGATGTGGACAGCGAGGTGATCCTGCACCACGAGTATTTCCTACTCAAGGCCAAGTATGCGCAGGACGAGCACCTCATTACGTTCTTCGTGCCCGTCTTTGAACCGCTGCCCCCTCAGTACTTCATCCGTGTGGTGTCTGACCGCTGGCTCTCTTGTGAGACCCAGCTGCCTGTCTCTTTCCGGCACCTGATCCTACCGGAGAAGTACCCACCCCCAACCGAGCTTCTGGACCTGCAGCCCTTGCCCGTGTCTGCCCTGAGAAACAGTGCCTTTGAGAGCCTTTACCAAGATAAATTTCCTTTCTTCAACCCCATCCAGACCCAGGTGTTTAACACCGTGTACAACAGCGATGACAACGTGTTTGTGGGGGCCCCCACGGGCAGCGGGAAGACCATCTGTGCGGAGTTCGCCATCCTGCGGATGCTGCTGCAGAACTCAGAGGGCCGCTGTGTCTACATCACCCCCATGGAGGCTCTGGCGGAGCAGGTGTACATGGACTGGTACGAGAAGTTCCAGGACAGGCTCAACAAGAAGGTGGTGCTCCTGACGGGGGAGACCAGCACGGACCTGAAGCTTCTGGGCAAAGGCAACATCATCATCAGCACCCCCGAGAAGTGGGACATCCTTTCCCGGCGGTGGAAGCAGCGCAAGAATGTCCAGAACATCAACCTCTTCGTGGTGGATGAGGTCCACCTTATCGGGGGCGAGAATGGGCCCGTCCTAGAGGTGATCTGCTCCCGGATGCGCTACATCTCCTCCCAGATCGAGAGGCCCATTCGCATCGTGGCCCTCAGCTCCTCGCTCTCGAACGCGAAGGACGTGGCCCACTGGCTGGGGTGCAGCGCCACCTCCACCTTCAACTTCCACCCGAACGTGCGCCCCGTGCCCTTGGAGCTGCACATCCAGGGCTTCAACATTAGCCACACACAGACTCGCCTGCTGTCCATGGCCAAGCCTGTGTACCACGCCATCACCAAGCACTCGCCCAAGAAGCCCGTCATTGTCTTCGTTCCGTCTCGCAAGCAGACACGCCTCACCGCCATCGACATCCTCACCACGTGTGCGGCCGACATCCAGCGGCAGAGGTTCCTGCACTGCACGGAGAAGGACCTGATCCCCTACCTGGAGAAGCTGAGTGACAGCACGCTCAAGGAGACGCTGCTAAACGGGGTGGGCTACCTGCACGAGGGGCTCAGCCCCATGGAGCGGCGCCTGGTGGAGCAGCTCTTCAGCTCAGGGGCTATCCAGGTGGTGGTAGCTTCTCGGAGTCTCTGCTGGGGCATGAATGTGGCCGCCCACCTGGTGATTATCATGGATACCCAGTACTACAACGGCAAGATCCACGCGTACGTGGATTACCCCATCTACGACGTGCTGCAGATGGTGGGGCACGCCAACCGCCCTTTGCAGGATGACGAGGGGCGCTGCGTCATCATGTGCCAGGGCTCCAAAAAGGATTTCTTCAAAAAGTTCTTATATGAGCCTTTGCCAGTAGAGTCTCACCTGGACCACTGTATGCATGACCACTTCAATGCTGAGATTGTCACCAAGACCATTGAGAACAAGCAGGATGCCGTGGACTACCTCACCTGGACCTTTCTGTACCGCCGCATGACACAGAACCCCAATTATTACAACCTGCAGGGTCAGTGGCTTTGGAGCACACCTTATCCTTTTGCGGTTTTCACAGCCCTTGCTCGCCATCTCCCTGTGACTCCCCACTTACCTCTCACCTTCACAGGCATCTCCCATCGTCACCTGTCTGACCACTTGTCGGAGCTCGTGGAACAGACCCTGAGTGACCTGGAGCAGTCCAAGTGCATCAGCATTGAGGACGAGATGGACGTGGCGCCTCTGAACCTGGGCATGATCGCTGCCTACTATTACATCAACTACACCACCATTGAGCTCTTCAGCATGTCCCTGAATGCCAAGACCAAGGTGCGAGGGCTTATTGAAATCATCTCCAATGCGGCCGAGTATGAGAACATTCCCATCCGGCACCATGAAGACAACCTCCTGCGGCAGTTGGCCCAGAAGGTCCCCCACAAGCTGAATAACCCTAAGTTCAACGACCCGCACGTCAAGACCAACCTGCTTCTGCAGGCCCACCTGTCCCGCATGCAGCTGAGTGCTGAGCTGCAGTCGGATACAGAGGAGATCCTTAGCAAGGCCATCCGGCTCATCCAGGCCTGTGTGGATGTCCTCTCCAGCAACGGGTGGCTCAGCCCGGCTCTGGCAGCCATGGAGCTGGCCCAGATGGTCACCCAAGCCATGTGGTCCAAGGACTCATACCTGAAACAGCTGCCACACTTCACCTCAGAGCACATCAAACGTTGCACAGACAAGGGGGTGGAGAGTGTTTTTGACATCATGGAGATGGAGGACGAAGAGCGCAACGCGTTGCTTCAGCTGTCTGATAGCCAGATCGCAGACGTGGCCCGCTTCTGTAACCGCTACCCCAACATCGAGCTGTCCTACGAGGTGGTGGACAAGGACAGCATCCGCAGTGGCGGGCCGGTTGTGGTGCTGGTGCAGCTGGAGCGAGAGGAGGAAGTCACAGGCCCCGTGATCGCGCCTCTCTTCCCACAGAAACGTGAAGAGGGCTGGTGGGTGGTGATCGGAGATGCCAAGTCGAATAGCCTTATTTCCATCAAGAGGCTGACCCTGCAGCAGAAGGCCAAGGTGAAGCTCGACTTTGTGGCCCCGGCCACTGGCGCCCACAACTACACTCTGTACTTCATGAGCGACGCTTACATGGGATGTGACCAGGAGTACAAATTCAGCGTGGATGTGAAAGAAGCTGAGACAGACAGTGACTCCGACTGA

Related Sequences

bmy_06898T0 SequenceType object (3)

Length: 2169 aa      View alignments
>bmy_06898T0
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKPQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFIQAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKITDYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTLSANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGQWLWSTPYPFAVFTALARHLPVTPHLPLTFTGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD*