Part of scaffold_262 (Scaffold)

For more information consult the page for scaffold_262 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RTCB ENSTTRG00000006417 (Bottlenosed dolphin)

Gene Details

RNA 2',3'-cyclic phosphate and 5'-OH ligase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006073, Bottlenosed dolphin)

Protein Percentage 99.15%
cDNA percentage 98.44%
Ka/Ks Ratio 0.09338 (Ka = 0.0041, Ks = 0.0444)

C5H22orf28 ENSBTAG00000011070 (Cow)

Gene Details

tRNA-splicing ligase RtcB homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014699, Cow)

Protein Percentage 98.81%
cDNA percentage 95.51%
Ka/Ks Ratio 0.03704 (Ka = 0.0058, Ks = 0.1568)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1626 bp    Location:502566..524121   Strand:+
>bmy_06957
GCCGCGCCTGCGCGTTGGGTTCCGGAAGGTGGTGTTTCGGTTAGCGGGACAACGCGGCAGCGGGTCTTCAAAGCGAAGCCGGGAGTTTTCGCCACTCTTGTCGCCGCCATGAGCCGCAGTTATAACGATGAACTGCAGTTCTTGGAAAAGGTCAATAAAAGCTGCTGGAGAATCAAGAAGGGCTTCGTGCCCAACATGCAGGTTGAAGGAGTTTTCTATGTGAATGATGCTCTGGAAAAATTAATGTTTGAAGAATTAAGGAATGCCTGTCGAGGTGGTGGTGTTGGTGGCTTCCTGCCAGCCATGAAACAAATCGGCAATGTGGCCGCCCTGCCTGGGATTGTTCATCGATCCATTGGGCTTCCTGATGTCCATTCAGGTTATGGGTTTGCTATTGGGAATATGGCAGCTTTTGATATGAATGACCCTGAAGCAGTGGTATCCCCAGGTGGCGTCGGATTTGACATCAACTGTGGTGTCCGCTTGCTAAGAACCAGTTTAGACGAAAGTGATGTCCAGCCTGTGAAGGAGCAACTTGCCCAAGCTATGTTTGACCACATTCCTGTTGGGGTGGGGTCAAAAGGCGTCATCCCAATGAATGCCAAAGACTTGGAGGAGGCCTTGGAGATGGGTGTGGACTGGTCCCTAAGAGAAGGCTACGCCTGGGCGGAAGACAAGGAGCACTGTGAGGAGTACGGGAGGATGCTGCAGGCTGACCCCAACAAGGTCTCTGCCAGGGCTAAAAAGAGAGGCCTGCCCCAGTTGGGGACTCTGGGAGCAGGCAACCACTATGCAGAAATCCAGGTTGTGGATGAGATTTTCAATGAGTATGCTGCTAAGAAAATGGGCATCGACCATAAGGGACAGGTGTGTGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCCACCAAGTAGCCACAGATGCGCTGGTAGCTATGGAAAAAGCCATGAAGAGAGACAAGATTATAGTCAATGACCGTCAGTTGGCTTGTGCTCGAATCGCTTCCTCAGAGGGTCAGGACTACCTGAAGGGAATGGCAGCGGCTGGGAACTATGCCTGGGTCAACCGCTCTTCCATGACCTTCTTAACCCGTCAGGCTTTTGCCAAGGTCTTCAACACAACCCCTGATGACTTGGACCTACATGTGATCTATGATGTTTCTCACAATATTGCCAAAGTAGAACAGCATGTGGTGGATGGAAAGGAACGGACTCTGTTAGTACACAGGAAGGGATCCACCCGAGCTTTCCCTCCTCACCATCCCCTCATTGCGGTTGATTACCAACTCACTGGACAACCAGTGCTCATTGGCGGCACCATGGGAACCTGTAGCTATGTTCTCACTGGCACTGAGCAGGGCATGACCGAGACCTTTGGAACAACTTGTCATGGAGCGGGCCGTGCACTGTCCCGAGCAAAGTCAAGGCGTAATTTAGATTTCCAGGATGTCCTAGACAAATTGGCAGACATGGGAATTGCAATCCGTGTTGCCTCACCCAAGCTGGTTATGGAAGAGGCACCTGAGTCCTATAAGAATGTGACTGATGTGGTGAACACCTGCCATGATGCCGGAATCAGCAAGAAGGCCATTAAACTGAGACCGATTGCTGTTATCAAAGGATAG

Related Sequences

bmy_06957T0 Protein

Length: 542 aa      View alignments
>bmy_06957T0
AAPARWVPEGGVSVSGTTRQRVFKAKPGVFATLVAAMSRSYNDELQFLEKVNKSCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTSLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASSEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG*