Sequence detailsbmy_06977 (Coding sequence)

Part of scaffold_261 (SequenceType object (1))

For more information consult the page for scaffold_261 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CASD1ENSTTRG00000003721 (Bottlenosed dolphin)

Gene Details

CAS1 domain containing 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003494, Bottlenosed dolphin)

Protein Percentage 84.66%
cDNA percentage 86.75%
Ka/Ks Ratio 0.39902 (Ka = 0.0866, Ks = 0.2169)

CASD1ENSBTAG00000009109 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000012005, Cow)

Protein Percentage 91.88%
cDNA percentage 92.14%
Ka/Ks Ratio 0.25384 (Ka = 0.0538, Ks = 0.2121)

CASD1 (Minke Whale)

Gene Details

CAS1 domain containing 1

External Links

Gene match (Identifier: BACU016842, Minke Whale)

Protein Percentage 96.89%
cDNA percentage 97.25%
Ka/Ks Ratio 0.39185 (Ka = 0.0218, Ks = 0.0556)

Additional orthologs identified in other species via the OPTIC pipeline.

CASD1 (Human)   Casd1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1926 bp    Location:270929..187977   Strand:-
Raw sequence 
>bmy_06977
ATGGGAAATGTGGAAACGGACATTGAGCAATCCTCGAGTTCTTTCCTTTACTTTCTTTGTCTTCATACCAGACCTTACCGAACAGGAAATGATTCATGTGAATACCTTCTCTCAAGTGGCAGATTTCTTGGAGAGAAAGTTTGGCAACCTCACAGCTGTATGATGCATAAGTACAAAATCAGTGAAGCGAAGAACTGCCTTGTAGATAAACATATTGCATTTATTGGAGATTCCAGAATTCGTCAATTGTTTTATTCTTTTGTAAAAATAATTAATCCCCAATTTAAAGAAGAAGGAAATAAGCATGAAAACATTCCTTTTGAAGACAAGACTGCATCAGTTAAAGTGGATTTTCTGTGGCATCCAGAGGTTAATGGTTCTATGAARCAGTGTATCAAAGTGTGGACTGAGGATTCTGTTGCAAAGCCCCATGTGGTTGTAGCAGGAGCTGCTACATGGTCTATTAAAATTCACAATGGCAGCAACGAAGCACTTTCCCAATATAAAATGAACATTACCTCCATAGCACCACTTTTAGAAAAATTGGCAAAGACTAGTGATGTTTATTGGGTCTTACAAGATCCTGTTTATGAAGATCTATTAAGTGAAAATAGGAAAATGATCACTAATGAGAAGATAGATGCCTACAATGAAGCTGCAATCAGTATTTTGAATAGCAGCACCAGAAATTCTAAATCGAATGTTAAGATGTTCAGTGTTTCCAAATTAATTGCTCAAGAAACCATCATGGAATCTTTGGATGGCTTACATCTTCCTGAATCAAGCAGAGAAACTAGTGCAATGATTCTTATGAACGTGTATTGCAATAAGATTTTGAAGCCTGTAGATGGTTCCTGTTGTCAACCCCGGCCTCCTCTTACTCTCCTACAGAAGCTAGCTGCTTGTTTTTTCACTTTATCTATTATTGGATATTTAATTTTTTATATAATTCATCGTAATGCTCATCGGAAGAATAAGCCTTGTACTGATTTGGAAAGTGGAGAAGAAAAGAAAAATATTATCAATCCCCCAGTGTCTCCATTAGGAATACTTTTACAGTCTTTCTGCAAACTTGGCCTGATCATGGCTTATTTCTATATATGTGACCGTGCAAATCTATTTATGAAGGAAAACAAATTTTATACACATTCAACTTTCTTTATTCCAATTATCTACATCTTGGTTTTGGGAGTATTTTACAATGAAAATACTAAGGAGACTAAAGTGTTAAATAGAGAACAAACAGATGAATGGAAAGGCTGGATGCAACTTGTGATTTTAATTTATCATATCTCTGGAGCAAGTACATTTTTGCCTGTGTACATGCACATTCGGGTTCTGGTTGCTGCGTATCTATTTCAGACAGGGTATGGGCATTTCTCATACTTTTGGATCAAAGGAGACTTTGGAATCCATAGAGTATGTCAGGGTGCATTTGAGAAGATCTTTTCTCTTTGGCCATTGTCCAAGTGTTTCGAACTGAAAGGCAATGTATATGAATGGTGGTTCAGATGGAGGTTAGACCGTTACGTAGTCTTTCACGGAATGTTGTTTGCTTTCATTTATCTGGCTTTACAGAAGCGCCAAGTACTTTCTGAAGGAAAGGGTGAACCTCTTTTTTCAAACAAAGTTTCAAATTTTCTATTATTTATTTCAGTAGTTTCTTTCTTGACCTATTCCATCTGGGCTAGCAGTTGTAAAAACAAAGCAGAGTGCAATGAACTCCACCCATCTGTTTCTGTGGTACAGATTTTAGCCTTCATCCTAATAAGGAATATCCCTGGATATGCCCGTTCAGTTTACAGTTCATTTTTTGCTTGGTTTGGAAAAATTTCATTAGAGGTTGGTACATTAATATTTTGGTCTGTCTTACACAACCAAGTGTTATATGCAGGTGTGTATGTGAATGAGTATATAGGTGTGTAA

Related Sequences

bmy_06977T0 SequenceType object (3)

Length: 642 aa      View alignments
>bmy_06977T0
MGNVETDIEQSSSSFLYFLCLHTRPYRTGNDSCEYLLSSGRFLGEKVWQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINPQFKEEGNKHENIPFEDKTASVKVDFLWHPEVNGSMKQCIKVWTEDSVAKPHVVVAGAATWSIKIHNGSNEALSQYKMNITSIAPLLEKLAKTSDVYWVLQDPVYEDLLSENRKMITNEKIDAYNEAAISILNSSTRNSKSNVKMFSVSKLIAQETIMESLDGLHLPESSRETSAMILMNVYCNKILKPVDGSCCQPRPPLTLLQKLAACFFTLSIIGYLIFYIIHRNAHRKNKPCTDLESGEEKKNIINPPVSPLGILLQSFCKLGLIMAYFYICDRANLFMKENKFYTHSTFFIPIIYILVLGVFYNENTKETKVLNREQTDEWKGWMQLVILIYHISGASTFLPVYMHIRVLVAAYLFQTGYGHFSYFWIKGDFGIHRVCQGAFEKIFSLWPLSKCFELKGNVYEWWFRWRLDRYVVFHGMLFAFIYLALQKRQVLSEGKGEPLFSNKVSNFLLFISVVSFLTYSIWASSCKNKAECNELHPSVSVVQILAFILIRNIPGYARSVYSSFFAWFGKISLEVGTLIFWSVLHNQVLYAGVYVNEYIGV*