Part of scaffold_261 (Scaffold)

For more information consult the page for scaffold_261 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL1A2 ENSTTRG00000003717 (Bottlenosed dolphin)

Gene Details

collagen, type I, alpha 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003493, Bottlenosed dolphin)

Protein Percentage 74.35%
cDNA percentage 80.69%
Ka/Ks Ratio 0.66262 (Ka = 0.2051, Ks = 0.3095)

COL1A2 ENSBTAG00000013472 (Cow)

Gene Details

Collagen alpha-2(I) chain

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000033771, Cow)

Protein Percentage 73.66%
cDNA percentage 78.78%
Ka/Ks Ratio 0.4919 (Ka = 0.2125, Ks = 0.432)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4152 bp    Location:367067..322646   Strand:-
>bmy_06979
ATGCAGGTGTCGCAACAGGTGCTGGAATACAGATCCCTGAGGAAGCAGATACAGGCAGCTTTACAAGAGGCAACTGCAAAAAAGGGTCCGCCAGGCCCACCAGGCAGAGACGGTGATGATGGTATCCCAGGCCCTCCTGGTCCACCTGGTCCTCCTGGTCCCCCTGGTCTTGGTGGGAACTTTGCTGCTCAGTATGATGGAAAAGGAGTCGGAATTGGCCCTGGACCAATGGGTTTGATGGGACCTAGAGGCCCTCCTGGTGCATCTGGAGCCCCTGGCCCTCAAGGTTTCCAAGGACTGCCTGGTGAGCCTGGTGAGCCTGGTCAAACTGGTCCTGCAGGTTCTCGTGGTCCACCTGGCCCTCCTGGCAAGGGTGGTGAGGATGGTCACCCTGGAAAACCTGGACGACCTGGTGAGAGAGGAGTTGTTGGGCCACAGGGTGCTCGTGGTTTCCCTGGAACTCCTGGACTCCCTGGCTTCAAGGGCATTAGGGGTCACAATGGTCTGGATGGATTGAAGGGACAGCCTGGTACTCCAGGTGTGAAGGGTGAACCTGGTGCCGCTGGTGAAAATGGAATTCCAGGTCAAATGGGAGCTCGTGGGCTTCCTGGTGAGAGAGGACGTGTCGGTGCCCCTGGCCCAGCTGGTGCCCGTGGAAGTGATGGAAGTGTGGGTCCTGTGGGTCCTGCTGGTCCTCTTGGCTCTGCTGGCCCTCCAGGCTTCCCAGGTGCTCCTGGCCCCAAGGGTGAACTTGGACCTGTCGGTAACCCTGGTCCTTCTGGTCCCGCGGGTTCCCGTGGTGAAGTGGGTCTTCCAGGTGTTTCTGGCCCTGTGGGACCTCCTGGCAACCCTGGAGCCAATGGCCTTCCTGGTGCTAAGGGTGCTGCTGTGAGTATATGGCTAAAACGTGCTGCTGTGGTTTTAAAGGGCCTTCCCGGTGTTGCTGGGGCTCCTGGCCTCCCTGGACCCCGGGGTATTCCTGGCCCTGTTGGTGCTGCTGGTGCTACTGGTGCCAGAGGACTTGTTGGTGAGCCTGGTCCAGCTGGTTCCAAAGGAGAGAGTGGCAACAAGGGCGAGCCCGGTGCTGCTGGGCCCACGGGTCCTCCTGGTCCCAGTGGCGAAGAAGGAAAGAGAGGCACCACTGGTGAAATTGGATCCACTGGCCCCCCAGGACCTCCTGGGCTGAGGGGAAATCCTGGTTCTCGTGGTCTTCCTGGAGCTGACGGCAGAGCTGGTGTCATGGGCCCTCCTGGTAGTCGTGGTGGAACTGGCCCTGCTGGTATGCGAGGTCCCAGTGGAGATTCTGGTCGCCCTGGAGAGCCTGGCCTCATGGGACCCCGAGGTTTTCCTGGTTCCCCTGGAAATGTTGGCCCAGCTGGTAAAGAAGGTCCAATGGGCCTCCCTGGTATTGATGGCAGGCCTGGAGCAATTGGCCCGGCTGGAGCAAGAGGAGAGCCTGGCAACATCGGATTCCCTGGACCCAAAGGCCCCACTGGTGATCCTGGCAAAAATGGTGAAAAAGGTCATGCGGGTCTTGCCGGTCCTCGGGGTGCTGCAGGTCCTGAAGGAAACAATGGTGCTCAGGGACCTCCTGGACTACAGGGTGTCTCAGGTGGAAAAGGTGAACAGGGTCCCGCTGGTCCTCCAGGTTTCCAGGGTCTGCCTGGCCCTGCAGGTACAGCTGGTGAAGCTGGCAAAGCAGGAGAAAGGGGTATCCCTGGTGAATTTGGTCTCCCTGGTCCTGCTGGTCCAAGAGGGGAGCGTGGTCCCCCAGGTGAAAGTGGTGCTGCTGGGCCTGCTGGGCCTATTGGAAACCGAGGTCCTTCTGGACCTGCAGGGCCTGATGGGAACAAGGGCGAACCTGGTGTGGCTGGTGCCCCAGGCACTGCTGGTCCATCTGGTCCTAGTGGACTCCCAGGAGAAAGGGGTGCTGCTGGCATACCTGGAGGCAAGGGAGAAAAGGGTGAAACTGGTCTCAGAGGTGATGCTGGTAGCCACGGCAGAGATGGTGCTCGTGGTGCTCCTGGTGCTGTAGGTGCCCCTGGTCCTGCTGGAGCCAATGGGGACCGGTTCTCTTTCCCTTCCTATACACGTGCCAGGGTGAAGCTGGCCCTGCCGGTTCCGCTGGTGCTGCTGGTTCTCGTGGTATCCCTGGTGAGCGTGGTGAGGTTGGTCCCGCTGGCCCCAATGGATTTGCTGGTCCTGCTGGTGCTGCTGGTCAACCTGGTGCTAAAGGAGAGAGAGGAACAAAAGGACCCAAGGGTGAAAATGGCCCTGCTGGTCCCACAGGCCCCGTTGGAGCTGCTGGCCCAGCTGGTCCAAATGGTCCCCCTGGTCCTGCTGGAAGTCGTGGTGATGGAGGCCCCCCTGGTGTTACTGGTTTCCCTGGTGCTGCTGGACGGACTGGTCCTCCTGGACCCTCTGGTATCACTGGCCCCCCTGGTCCCACTGGTCCTGCTGGTAAAGAAGGACTTCGTGGGCCTCGTGGTGACCAAGGTCCAGTTGGTCGAACTGGAGAAACAGGTGCTTCTGGCCCTCCTGGCTTTGCTGGTGAGAAGGGTCCCTCTGGAGAGCCTGGTACTGCTGGATCTCCTGGCACCCCAGGTCCTCAAGGTCTTCTTGGTGCTCCTGGTTTTCTGGGTCTCCCAGGCTCTAGAGGTGAACGTGGTCTACCAGGTGTTGCTGGATCTGTGGGTGAACCTGGCCCTCTCGGCATTTCAGGCCCAACTGGGGCCCGTGGTCCCCCTGGTGCTGTGGGTAATCCTGGCGTCAATGGTGCTCCTGGTGAAGCTGGTCGTGATGGCAACCCTGGGAATGATGGTGCCCCAGGCCGCGATGGTCAAGCTGGACACAAGGGAGAGCGTGGTTACCCTGGTAACGCTGGTCCCACTGGTACTGTGGGTGCACCTGGTCCTCAAGGCCCTGTGGGTCCCACTGGCAAACATGGAAACCGCGGTGAATCTGGTCCTTCTGGTCCCACTGGTCTGGCCGGTGCTGTTGGTCCAAGAGGTCCCAGTGTATGTACATGGTGAAAATTTCTGTACAGCAGGCCCACAAGGTATTCGAGGTGATAAGGGAGAGCCTGGTGATAAGGGGCCCAGAGGTCTTCCTGGCTTAAAGGGACACAATGGATTGCAGGGTCTTCCTGGTTTTGCTGGTCATCATGGCGATCAAGGTGCTCCTGGCACTGTGGGTCCTGCTGGTCCTAGGGGCCCTGCTGGTCCTTCTGGCCCTTCTGGCAAGGATGGTCGCACTGGACATCCTGGTGCAGTCGGACCTGCTGGCATTCGTGGCTCTCAGGGTAGCCAAGGTCCTGCTGGCCCTCCTGGTCCTCCTGGCCCTCCTGGCCCTCCTGGCCAAAGTGGTGGTGGTTATGACTTCGGTTTTGAAGGAGACTTCTACAGGGCTGACCAGCCTCGCTCACCACCGTCTCTCAGACCCAAGGATTATGAAGTTGATGCTACTCTGAAATCTCTCAACAACCAGATTGAGACTCTTCTTACTCCAGAAGGCTCTAAGAAGAACCCAGCTCGCACATGCCGTGACTTGAGACTCAGCCACCCAGAATGGAGCAGTGGTTACTACTGGATTGACCCTAACCAAGGATGTACTATGGATGCTATCAAAGTATACTGTGATTTCTCTACTGGCGAAACCTGCATCCGGGCTCAGCCTGAAAACATCCCAGTCAAGAACTGGTACAGAAGTTCCAAGGCCAAGAAGCACGTCTGGGTAGGAGAAACTATCAATGGTGGTACCCAGTTTGAATATAATGTTGAAGGAGTAACCACCAAGGAAATGGCTACCCAACTTGCCTTCATGCGCCTGCTGGCCAACCATGCCTCTCAAAACATCACCTACCATTGCAAGAACAGCATTGCATACATGGATGAGGAGACTGGCAACCTGAAAAAGGCTGTCATTCTGCAAGGATCCAATGATGTTGAACTTGTTGCCGAGGGCAACAGCAGATTCACTTACACTGTTCTTGTAGATGGCTGCTCTAAAAAGATAAATGAATGGAGAAAGACAATCATTGAATATAAAACAAATAAGCCATCTCGCCTGCCCATCCTTGATATTGCACCTTTGGACATCGGTGGCGCTGACCAAGAAATCAGATTGAACATTGGCCCAGTCTGTTTCAAATAA

Related Sequences

bmy_06979T0 Protein

Length: 1384 aa      View alignments
>bmy_06979T0
MQVSQQVLEYRSLRKQIQAALQEATAKKGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGIGPGPMGLMGPRGPPGASGAPGPQGFQGLPGEPGEPGQTGPAGSRGPPGPPGKGGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGTPGVKGEPGAAGENGIPGQMGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPLGSAGPPGFPGAPGPKGELGPVGNPGPSGPAGSRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAVSIWLKRAAVVLKGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAAGPTGPPGPSGEEGKRGTTGEIGSTGPPGPPGLRGNPGSRGLPGADGRAGVMGPPGSRGGTGPAGMRGPSGDSGRPGEPGLMGPRGFPGSPGNVGPAGKEGPMGLPGIDGRPGAIGPAGARGEPGNIGFPGPKGPTGDPGKNGEKGHAGLAGPRGAAGPEGNNGAQGPPGLQGVSGGKGEQGPAGPPGFQGLPGPAGTAGEAGKAGERGIPGEFGLPGPAGPRGERGPPGESGAAGPAGPIGNRGPSGPAGPDGNKGEPGVAGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGLRGDAGSHGRDGARGAPGAVGAPGPAGANGDRFSFPSYTRARVKLALPVPLVLLVLVVSLVSVVRLVPLAPMDLLVLLVLLVNLVLKEREEQKDPRVKMALLVPQAPLELLAQLVQMVPLVLLEVVVMEAPLVLLVSLVLLDGLVLLDPLVSLAPLVPLVLLVKKDFVGLVVTKVQLVELEKQVLLALLALLVRRVPLESLVLLDLLAPQVLKVFLVLLVFWVSQALEVNVVYQVLLDLWVNLALSAFQAQLGPVVPLVLWVILASMVLLVKLVVMATLGMMVPQAAMVKLDTRESVVTLVTLVPLVLWVHLVLKALWVPLANMETAVNLVLLVPLVWPVLLVQEVPVYVHGENFCTAGPQGIRGDKGEPGDKGPRGLPGLKGHNGLQGLPGFAGHHGDQGAPGTVGPAGPRGPAGPSGPSGKDGRTGHPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGQSGGGYDFGFEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSKKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRAQPENIPVKNWYRSSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKINEWRKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCFK*