Sequence detailsbmy_07042 (Coding sequence)

Part of scaffold_273 (SequenceType object (1))

For more information consult the page for scaffold_273 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HTRA1ENSTTRG00000005241 (Bottlenosed dolphin)

Gene Details

HtrA serine peptidase 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004944, Bottlenosed dolphin)

Protein Percentage 93.55%
cDNA percentage 92.29%
Ka/Ks Ratio 0.17566 (Ka = 0.0418, Ks = 0.2377)

HTRA1 (Minke Whale)

Gene Details

HtrA serine peptidase 1

External Links

Gene match (Identifier: BACU004717, Minke Whale)

Protein Percentage 93.14%
cDNA percentage 93.52%
Ka/Ks Ratio 0.28537 (Ka = 0.0444, Ks = 0.1556)

Additional orthologs identified in other species via the OPTIC pipeline.

HTRA1 (Cow)   HTRA1 (Human)   Htra1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 561 bp    Location:66534..60032   Strand:-
Raw sequence 
>bmy_07042
GGAAAGCTGCCCGTGCTACTGCTCGGCCGCTCCTCGGAGCTGCGGCCCGGGGAGTTTGTGGTGGCCATCGGAAGCCCGTTTTCCCTTCAAAACACTGTCACCACGGGGATCGTCAGCACCACCCAGCGAGGCGGCAAAGAGCTGGGGCTCCGGAACTCGGACATGGACTACATCCAGACAGACGCCATCATCAAYTACGGAAACTCCGGAGGCCCATTAGTAAACCTGGATGGTGAAGTGATTGGAATTAACACACTGAAAGTGACAGCTGGTATCTCCTTTGCAATTCCATCTGATAAGATTAAAAAGTTCCTAACGGAATCCCACGACCGACAAGCCAAAGGTCCTAAACTGTGCCTCTGTCGATGTAAAGTCGATTACCTTTCGTGGCATGGTGGGCTCAAGGAAAATGATGTCATCATTAGCATCAATGGACAGTCGGTGGTCTCCGCCAACGACGTCAGCGACGTCATTAAGAAGGAAAGCACCCTGAACATGGTTGTCCGCAGGGGCAATGAAGACATTATGATCACCGTGATTCCCGAAGAAATCGACCCGTAG

Related Sequences

bmy_07042T0 SequenceType object (3)

Length: 187 aa      
>bmy_07042T0
GKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGPKLCLCRCKVDYLSWHGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRRGNEDIMITVIPEEIDP*