Part of scaffold_283 (Scaffold)

For more information consult the page for scaffold_283 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

GGPS1 ENSBTAG00000013068 (Cow)

Gene Details

Geranylgeranyl pyrophosphate synthase

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017376, Cow)

Protein Percentage 90.25%
cDNA percentage 93.08%
Ka/Ks Ratio 0.26667 (Ka = 0.0453, Ks = 0.1698)

GGPS1  (Minke Whale)

Gene Details

geranylgeranyl diphosphate synthase 1

External Links

Gene match (Identifier: BACU009349, Minke Whale)

Protein Percentage 64.53%
cDNA percentage 75.5%
Ka/Ks Ratio 0.82238 (Ka = 0.3003, Ks = 0.3652)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 711 bp    Location:1037212..1035997   Strand:-
>bmy_07119
ATGGAGAAGACTCAAGAAACAGCCCAAAGAATTCTTCTAGAACCTTGTAAGTACTTACCTCAGTTACCAGGTAAACAAGTGAGAACCAAACTTTCACAGGCAATTAATCATTGGCTAAAAGTTCCCGAAGACAAGCTACAGATTATCACTGAAGTGACGGAAATGGTGCATAATGCCAGTTTACTCTTTGATGATGTCGAAGACAACTCAAAACTCCGACATGGCTTTCCAGTGGCACACAGCATCTATGGAATTCCATCTACAGGAGGACTATTTGGATTAACAGTAGGTCTCATGCAGTTGTTCTCTGATTACAAAGAAGATTTAAAGCCACTGCTGAATACACCTGGGCTGTTTTTCCAAATTAGGGATGATTATGCTAATCTACACTCCAAAGAATATAGTGAAAACAAAAACGTTTGTGAAGATCTAACAGAGGGAAAGTTCTCATTCCCTACTATTCATGCTATCTGGTCGAGGCCTGAAACCACCCAGGTGCAGAATATCTCGTGCCAGAGAACCGAAAACGTAGATATTAAAAAATACTGTGTACATTATCTTGAGAAAGTAGGTTCTTTTGAATACACACAGAATACTCTTAAAGAGATTGAATCTAAAGCCTATAAACAAATTGATGCATGTGGTGGGAACCCTGAGCTAGTAGCGCTAACAAAACACTTAAGTAAAATGTTCAAAGAAGAGAATGAATAA

Related Sequences

bmy_07119T0 Protein

Length: 237 aa      View alignments
>bmy_07119T0
MEKTQETAQRILLEPCKYLPQLPGKQVRTKLSQAINHWLKVPEDKLQIITEVTEMVHNASLLFDDVEDNSKLRHGFPVAHSIYGIPSTGGLFGLTVGLMQLFSDYKEDLKPLLNTPGLFFQIRDDYANLHSKEYSENKNVCEDLTEGKFSFPTIHAIWSRPETTQVQNISCQRTENVDIKKYCVHYLEKVGSFEYTQNTLKEIESKAYKQIDACGGNPELVALTKHLSKMFKEENE*