Part of scaffold_292 (Scaffold)

For more information consult the page for scaffold_292 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RRH ENSTTRG00000004607 (Bottlenosed dolphin)

Gene Details

retinal pigment epithelium-derived rhodopsin homolog

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004337, Bottlenosed dolphin)

Protein Percentage 97.63%
cDNA percentage 98.22%
Ka/Ks Ratio 0.28067 (Ka = 0.0098, Ks = 0.0349)

RRH ENSBTAG00000000751 (Cow)

Gene Details

visual pigment-like receptor peropsin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000997, Cow)

Protein Percentage 93.18%
cDNA percentage 93.87%
Ka/Ks Ratio 0.22581 (Ka = 0.0345, Ks = 0.1528)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1014 bp    Location:486373..501052   Strand:+
>bmy_07172
ATGCTAAGGAATAATTTAGGCAACAGTTCAGACTCTAAAAATGAAGACGGCTCGGCCTTTTCACAGACTGAACACAATATTGTTGCAGCTTACTTGATTACAGCAGGTATGATAAGTGTTCTCAGCAACATAATAGTTCTGGGCATCTTCATTAAGTACAAGGAGCTTCGGACACCCACAAATGCAATTATCATTAACTTGGCTGTTACTGATATAGGKGTCAGTAGCATTGGCTACCCCATGTCTGCTGCTTCAGATCTGCATGGAAGTTGGAAGTTTGGATATGCAGGATGTCAGATTTATGCTGGATTGAATATCTTTTTTGGAATGGCAAGTATTGGATTGCTCACAGTTGTGGCTGTGGATCGATACCTGACCATCTGCTGTCCTGATGCAGGAAGAAGAATGACCACCAACACTTACATCAGCATGATTCTGGGGGCCTGGATCAATGGCCTCTTTTGGGCTTTGATGCCTATTGTTGGGTGGGCTAGTTATGCCCCAGATCCTACTGGGGCCACCTGTACCATAAACTGGCGGAAAAATGATGTATCTTTTGTTTCTTACACCATGATGGTTGTTGCAATAAATTTTATTGTGCCCTTGATAATGATGTTTTACTGCTATTACCATGTCACTCGATCCATTAAACATCATGCCACTAGTACCTGCACTGAGTATCTCAACAGAGATTGGTCAGATCAGGTAGATRTAACAAAGATGTCTGTGATAATGATACTCATGTTCCTGGTGGCGTGGTCCCCTTATTCCATCGTGTGCTTATGGGCTTCTTTTGGTGACCCAAAGAAGATTCCTCCCTCAATGGCCATCCTAGCTCCACTGTTTGCAAAATCTTCTACATTCTACAATCCCTGTATTTATGTGATTGCTAATAAAAAGTTCCGGAGGGCGATGCTTGCCATGTTCAAATGTCAGACTCACCAAGCAATGCCCATGGCGGGTATCTTACCAATGGATGTACCCCAAAACCCACTGACTTCTGGAAAAGTCTGA

Related Sequences

bmy_07172T0 Protein

Length: 338 aa      View alignments
>bmy_07172T0
MLRNNLGNSSDSKNEDGSAFSQTEHNIVAAYLITAGMISVLSNIIVLGIFIKYKELRTPTNAIIINLAVTDIGVSSIGYPMSAASDLHGSWKFGYAGCQIYAGLNIFFGMASIGLLTVVAVDRYLTICCPDAGRRMTTNTYISMILGAWINGLFWALMPIVGWASYAPDPTGATCTINWRKNDVSFVSYTMMVVAINFIVPLIMMFYCYYHVTRSIKHHATSTCTEYLNRDWSDQVDXTKMSVIMILMFLVAWSPYSIVCLWASFGDPKKIPPSMAILAPLFAKSSTFYNPCIYVIANKKFRRAMLAMFKCQTHQAMPMAGILPMDVPQNPLTSGKV*