Part of scaffold_295 (Scaffold)

For more information consult the page for scaffold_295 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA6A ENSTTRG00000004859 (Bottlenosed dolphin)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004607, Bottlenosed dolphin)

Protein Percentage 97.02%
cDNA percentage 95.88%
Ka/Ks Ratio 0.2378 (Ka = 0.0246, Ks = 0.1034)

SEMA6A ENSBTAG00000020489 (Cow)

Gene Details

semaphorin-6A precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000041442, Cow)

Protein Percentage 94.8%
cDNA percentage 91.95%
Ka/Ks Ratio 0.13343 (Ka = 0.0352, Ks = 0.2637)

SEMA6A  (Minke Whale)

Gene Details

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

External Links

Gene match (Identifier: BACU014985, Minke Whale)

Protein Percentage 97.47%
cDNA percentage 96.87%
Ka/Ks Ratio 0.35788 (Ka = 0.0228, Ks = 0.0637)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2016 bp    Location:204200..243037   Strand:+
>bmy_07265
ATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTCGCTGGGGCTGCTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACTATACAAAACAGTATCCGGTGTTTGTGGGCCACAAGCCAGGACGGAACACCACGCAGAGGCACAGGCTGGACATCCAGATGATCATGATCATGAACAGAACCCTCTACATTGCTGCTAGGGACCATATTTATACTGTTGATATAGACACCTCACACACAGAAGAAATTTACTGTAGCAAAAAACTGACATGGAAATCTAGACAGACTGATGTAGACACATGCAGAATGAAGGGAAAACATAAGGATGAGTGTCACAACTTCATTAAAGTTCTTCTAAAGAAAAACGATGATACTTTGTTTGTCTGCGGAACTAATGCCTTCAACCCTTCCTGCAGAAACTATAAGATGGATACTTTGGAACCTTTTGGGGATGAATTTAGTGGAATGGCCAGATGCCCTTACGATGCCAAACATGCCAACATTGCACTGTTTGCAGACGGAAAACTGTACTCTGCTACAGTGACTGACTTCCTTGCCATTGATGCAGTCATTTACCGGAGTCTTGGAGACAGCCCAACCCTACGGACCGTCAAGCATGATTCAAAATGGTTGAAAGAACCATATTTTGTCCAAGCGGTAGATTATGGAGACTACATCTACTTCTTCTTTAGGGAAATAGCGGTGGAGTACAACACCATGGGAAAGGTAGTTTTCCCAAGAGTGGCTCAGGTTTGTAAGAATGACATGGGAGGGTCACAAAGAGTCCTGGAGAAACAGTGGACATCTTTCCTTAAAGCTCGCCTGAACTGCTCAGTTCCAGGGGACTCTCATTTTTATTTCAACATCCTGCAGGCAGTTACAGACGTGATTCGTATTAATGGCCGTGATGTTGTCCTGGCAACCTTTTCCACACCTTATAACAGCATCCCTGGGTCTGCAGTGTGTGCCTATGACATGCACGATGTCGCCATTGTTTTTACTGGGAGATTCAAAGAACAGAAGTCTCCAGATTCCACGTGGACACCAGTTCCTGATGAACGAGTGCCTAAGCCTAGGCCAGGTTGCTGTGCTGGCTCATCCTCCTTAGAAAAATATGCAACCTCCAATGAATTTCCCGACGATACCCTGAATTTCATCAAAACGCACCCACTCATGGACGAGGCCGTGCCCTCCATCATCAACAAGCCATGGTTCCTGAGGACGATGGTCAGATACCGCCTGACCAAAATTGCGGTGGACACCGCTGCTGGGCCATATCAGAATCACACTGTGGTTTTCCTGGGATCAGAGAAAGGAATCATCTTGAAGTTCTTGGCCAGGATAGGAAACAGTGGTTTCCTAAATGACAGCCTTTTCCTGGAGGAGATGAGCGTCTACAACCCTGAAAAGTGCAGCTATGATGGAGTAGAAGACAAGAGGATTATGGGCATGCAACTGGACAAAGCAAGCAGCTCTCTGTATGTTGCATTTTCCACTTGTGTGATAAAGGTTCCCCTTGGCCGGTGTGAACGACATGGGAAGTGCAAAAAAACCTGTATCGCTTCCAGAGACCCCTACTGTGGGTGGGTAAAGGAAGGAGGTGCCTGTGCCCATCTGTCACCTGGCAGTAGACTGACTTTTGAACAGGACATAGAGCGTGGCAATACAGATGGCCTGGGAGACTGTCACAATTCCTTCGTGGCACTGAATGACATTTCAACTCCTCTACCAGATCATGAAATGTCTTACAACACAGTATATGGGCACTCCAGTTCCCTCCTGCCCAGCACCACCACGTCCAATTCGGCGGCTCAAGAGGGCTATGAGTCTAGGGGAGGAATGCTGGACTGGAAAGAGTCACCCGACAGCACAGACTCTTTGGGGGCAGTGTCTTCCCATAATCACCAAGACAAGAAGGGTAAGGCCTTGGAAGTACCTCTTCCTCTGGGGGGAGAGGGAGGGAAAAGTGGGGAGGACTCTGGAACTGCTTCCAGCTGA

Related Sequences

bmy_07265T0 Protein

Length: 672 aa      View alignments
>bmy_07265T0
MRSEALLLYFTLLHFAGAAFPEDSEPISISHGNYTKQYPVFVGHKPGRNTTQRHRLDIQMIMIMNRTLYIAARDHIYTVDIDTSHTEEIYCSKKLTWKSRQTDVDTCRMKGKHKDECHNFIKVLLKKNDDTLFVCGTNAFNPSCRNYKMDTLEPFGDEFSGMARCPYDAKHANIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDVIRINGRDVVLATFSTPYNSIPGSAVCAYDMHDVAIVFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINKPWFLRTMVRYRLTKIAVDTAAGPYQNHTVVFLGSEKGIILKFLARIGNSGFLNDSLFLEEMSVYNPEKCSYDGVEDKRIMGMQLDKASSSLYVAFSTCVIKVPLGRCERHGKCKKTCIASRDPYCGWVKEGGACAHLSPGSRLTFEQDIERGNTDGLGDCHNSFVALNDISTPLPDHEMSYNTVYGHSSSLLPSTTTSNSAAQEGYESRGGMLDWKESPDSTDSLGAVSSHNHQDKKGKALEVPLPLGGEGGKSGEDSGTASS*