Part of scaffold_300 (Scaffold)

For more information consult the page for scaffold_300 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SOX2 ENSTTRG00000004853 (Bottlenosed dolphin)

Gene Details

SRY (sex determining region Y)-box 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004572, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.79%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0249)

SOX2 ENSBTAG00000011598 (Cow)

Gene Details

transcription factor SOX-2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015411, Cow)

Protein Percentage 100.0%
cDNA percentage 98.44%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.1559)

SOX2  (Minke Whale)

Gene Details

SRY (sex determining region Y)-box 2

External Links

Gene match (Identifier: BACU016595, Minke Whale)

Protein Percentage 98.53%
cDNA percentage 99.27%
Ka/Ks Ratio 0.26946 (Ka = 0.0056, Ks = 0.0208)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 975 bp    Location:1008172..1007198   Strand:-
>bmy_07314
ATGTACAACATGATGGAGACGGAGCTGAAGCCGCCGGGCCCGCAGCAAACTTCGGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAACTCCACCGCGGCGGCGGCGGGCGGCAACCAGAAGAACAGCCCGGACCGCGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGTCCCGCGGGCAGCGGCGCAAGATGGCCCAAGAGAACCCCAAGATGCACAACTCGGAAATCAGCAAGCGCCTGGGCGCCGAGTGGAAACTTTTGTCGGAGACGGAGAAGCGGCCGTTCATCGACGAGGCCAAGCGGCTGCGAGCGCTGCACATGAAGGAGCACCCGGATTATAAATACCGGCCCCGGCGGAAAACCAAGACGCTCATGAAGAAGGATAAGTACACGCTGCCGGGAGGGCTGCTCGCCCCGGGCGGCAACAGCATGGCGAGCGGGGTCGGGGTGGGCGCCGGCCTCGGCGCGGGCGTGAACCAGCGCATGGACAGCTACGCGCACATGAACGGCTGGAGCAACGGCAGCTACAGCATGATGCAGGACCAGCTGGGCTACCCGCAGCACCCGGGCCTCAACGCGCACGGCGCCGCTCAGATGCAGCCCATGCACCGCTACGACGTGAGCGCCCTGCAGTACAACTCCATGACCAGCTCGCAGACCTACATGAACGGCTCGCCGACCTACAGCATGTCCTATTCGCAGCAGGGCACCCCTGGCATGGCTCTTGGCTCCATGGGCTCGGTGGTCAAGTCCGAGGCCAGCTCCAGCCCCCCCGTGGTTACCTCTTCTTCCCACTCCAGGGCGCCCTGCCAGGCCGGGGACCTCCGGGACATGATCAGCATGTACCTCCCCGGCGCCGAGGTGCCGGAGCCCGCCGCCCCCAGCAGACTTCACATGTCGCAGCACTACCAGAGCGGCCCGGTGCCCGGCACGGCCATTAACGGCACACTGCCCCTCTCGCACATGTGA

Related Sequences

bmy_07314T0 Protein

Length: 325 aa      View alignments
>bmy_07314T0
MYNMMETELKPPGPQQTSGGGGGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHYQSGPVPGTAINGTLPLSHM*