Part of scaffold_296 (Scaffold)

For more information consult the page for scaffold_296 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP53 ENSTTRG00000002906 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 53

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002725, Bottlenosed dolphin)

Protein Percentage 96.73%
cDNA percentage 97.41%
Ka/Ks Ratio 0.29855 (Ka = 0.018, Ks = 0.0602)

BT.95206 ENSBTAG00000010350 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000045997, Cow)

Protein Percentage 94.47%
cDNA percentage 94.29%
Ka/Ks Ratio 0.14386 (Ka = 0.0267, Ks = 0.1859)

USP53  (Minke Whale)

Gene Details

ubiquitin specific peptidase 53

External Links

Gene match (Identifier: BACU004221, Minke Whale)

Protein Percentage 97.98%
cDNA percentage 99.06%
Ka/Ks Ratio 0.78368 (Ka = 0.0091, Ks = 0.0116)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2226 bp    Location:990028..953653   Strand:-
>bmy_07323
ATGGCATGGGTAAAATTCTTACGGAAACCTGGTGGCAATCTTGGAAAAGCTTATCAACCTGGGAGTATGCTATCCCTAGCCCCTACCAAAGGCTTGTTGAATGAACCAGGACAAAACAGCTGCTTTCTTAATAGTGCTGTACAGGTTTTATGGCAATTAGATATATTCCGAAGAAGCTTGCGGGTTCTGACTGGACATGTTTGTCAGGGAGATGCCTGCATATTTTGTGCATTGAAGAAAATATTTGCACAGTTTCAACACAGTCGAGAAAAAGCACTTCCTTCGGATAACATAAGGCATGCACTTGCAGAAAGTTTCAAAGATGAGCAGCGATTTCAGCTTGGCCTTATGGATGATGCTGCAGAGTGCTTTGAAAATATATTGGAGAGGATTCATTTTCACATAGTGCCAAGCAGAGATGCAGACATGTGTACCTCTAAATCTTGTATCACTCACCAGAAGTTTGCTATGACTCTGTATGAACAGTGTGTGTGTCGTAGCTGTGGAGCATCATCAGATCCTCTACCCTTCACAGAATTTGTGCGCAATGAAGTTGAAAGAATGATGGAAAGGCATGAACGCTCTAAGCCTGAAATGTTTGCAGAATTGCTGCAAGCAGCGAATACAACTGATGACTATAGGAAATGTCCTAGTAACTGTGGCCAAAAAATAAAAATTCGGCGTGTTTTAATGAATTGCCCAGAGATTGTTACAATTGGTTTAGTCTGGGACTCTGAGCATTCTGACTTGACCGAAGATGTTGTTCGGAATCTCGCAACACATCTTTATCTTCCCGGGCTTTTTTATAGGGTTACTGATGAAAATGCCAAAAATAGTGAACTTCACCTTGTTGGCATGATTTGCTACACTAGCCGACATTATTGTGCCTTTGCTTTTCATACCAAGAGTTCCAAATGGGTATTTTTTGACGATGCAAATGTGAAAGAGGTTGGAACTAGATGGAAAGATGTGGTCTCCAAGTGTATCCGATGCCACTTCCAACCACTGCTTTTGTTTTATGCAAACCCAGATGGCACAGCAGTTTCCACTGAAGATGCGCTCAAGCAGGTCATCAACTGGTCACATCATAAATCCGTTGCAGAAAATATAGGATGTGAAAAGCCCTCAATTCATAAGTCGGAGAATTCAAAAGAAAATGAATTTGGTGATCAGACAAAACAGAGAGAAAATCAAAAATTTCAAGCAGATAGTATTTCATCATTTAATCGGAGCCACATTCAAACAAGTGGCAGTAGAGGAACAGTTAAGTCAAGTCACAATGATCAAAGGGAAAAAATAAAAGACATTTCCAGAGAATGTGCTCTAAAAGCCATTGAACAGAAAAACTTACTTTCCTCACAAAGGAAAGATTTGGAAAGGGGACAAAGAAAAGATTTGGGCAGACATAGAGATTTGGTTGATGAAGACCTTCCACATTTCAAGTCTGGATCACCTCCTGCCCCAAATGGCTTTAGACAATATGGGAATCCACATCTATATCATAGTCAAGGAAAAGGACCGTGTAAGCATGACCGAATTGCCCATCAGAATCGAGCTTCTGCACAAACATTAAGTTCAAGTAAATCCCAGATTCTTGCTTCAGGAGAGAAAATAACTGGCAAATTTAAGAGTGACAGTGGTACTGGATATGAAACAGACAGTAGCCAAGATTCTAGGGATAAAGGAAGCAGCTGTAATGGCAGCACTAAAAGCCGAAACCGAGGTTGGAAACCTATGAGAGAAACATTAAATGTCGATAGTATTTTTAATGAAAGTGAAAAAAGGCAACATAGTCCAAGACATAAATCAAATATTAGTAACAAATCTAAATGTAGCAAAGATCAGAGTTTTAACAGTTGTCCAAAAGAGAATCCAAAGCAAAAATGTTTAATGACTATATATGAAGATGAAATGAAGCAGGAAACAGGAAGCAGGAGTTCCCTTGAATTTAATGGAAAAGGAGCAGAGAAAAATAAAGCCCTCAAAGAAACTAAAGTTCATGGTGACAACTGGCAGATGCAAAGGACAGAGTCTGGATATGAAAGCAGTGATCATATCAGTAATGGCTCTGCTAATTTGGACTCACCTGTTATTGATGGAAACGGTACAGTGATGGATATCAGTGGTGTTAAAGAAACTGCATCCTTCAGCAACCAGATTAAGACAAGCAATCTAAACATAGATCGTATGAACTATACCTCCCAACAGAGCAAAAACTGCTTGGAA

Related Sequences

bmy_07323T0 Protein

Length: 742 aa      View alignments
>bmy_07323T0
MAWVKFLRKPGGNLGKAYQPGSMLSLAPTKGLLNEPGQNSCFLNSAVQVLWQLDIFRRSLRVLTGHVCQGDACIFCALKKIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILERIHFHIVPSRDADMCTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRNEVERMMERHERSKPEMFAELLQAANTTDDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWDSEHSDLTEDVVRNLATHLYLPGLFYRVTDENAKNSELHLVGMICYTSRHYCAFAFHTKSSKWVFFDDANVKEVGTRWKDVVSKCIRCHFQPLLLFYANPDGTAVSTEDALKQVINWSHHKSVAENIGCEKPSIHKSENSKENEFGDQTKQRENQKFQADSISSFNRSHIQTSGSRGTVKSSHNDQREKIKDISRECALKAIEQKNLLSSQRKDLERGQRKDLGRHRDLVDEDLPHFKSGSPPAPNGFRQYGNPHLYHSQGKGPCKHDRIAHQNRASAQTLSSSKSQILASGEKITGKFKSDSGTGYETDSSQDSRDKGSSCNGSTKSRNRGWKPMRETLNVDSIFNESEKRQHSPRHKSNISNKSKCSKDQSFNSCPKENPKQKCLMTIYEDEMKQETGSRSSLEFNGKGAEKNKALKETKVHGDNWQMQRTESGYESSDHISNGSANLDSPVIDGNGTVMDISGVKETASFSNQIKTSNLNIDRMNYTSQQSKNCLE