Part of scaffold_301 (Scaffold)

For more information consult the page for scaffold_301 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TBC1D1 ENSTTRG00000007662 (Bottlenosed dolphin)

Gene Details

TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007253, Bottlenosed dolphin)

Protein Percentage 68.22%
cDNA percentage 74.15%
Ka/Ks Ratio 0.61409 (Ka = 0.2826, Ks = 0.4602)

TBC1D1 ENSBTAG00000013699 (Cow)

Gene Details

TBC1 domain family member 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018206, Cow)

Protein Percentage 68.27%
cDNA percentage 72.97%
Ka/Ks Ratio 0.4691 (Ka = 0.2779, Ks = 0.5925)

TBC1D1  (Minke Whale)

Gene Details

TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1

External Links

Gene match (Identifier: BACU007649, Minke Whale)

Protein Percentage 13.99%
cDNA percentage 30.29%
Ka/Ks Ratio 0.19148 (Ka = 1.8641, Ks = 9.735)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2136 bp    Location:1354914..1307574   Strand:-
>bmy_07388
ATGGAGGTGCTTGAACTGGGTCTGGAAGAATCAGCAGATGCTAGTGGAGAGTCGATGGAAGAACATTCTAGAGTAAAGGCTCCGCTGCTTGCCTGCAGTTGTCAAATTAAAGGAAATGACCATTTAGTATACACAAGCAACCATAGAAACAACTTTTACCTGAAAAATCTTGTGCCTGAGATCATCAGCTCCATCCGGCAGGCCGGAAAGATCGCCCGCCAGGAGGAGCTCCGCTGCCCTTCCGAGTTCGATGACACGTTCGCCAAGAAGTTCGAGGTGCTGTTCTGCGGCCGCGTGGCGGTGGCGCACAGGAAGGCCCCGCCCGCCCTGATCGACGAGTGCATCGAGGGCTTCAGCCACGTGAGCGGCGGCGGCTTCTCCTCCTCAGATCAACTCTGGGCTGCGCGGCAGCCGCCCGGGGACCAGGAGCGGGACCCGCGGCCGATGCGCAAGTCCTTCTCCCAGCCCGGGCTGCGCTCCTTGGCTTTCAGGAAGGAGTTTCAGGATGCAGGCCTGCGGAGTAGTAGTTTTTTCAGCTCCTTTGAGGAAAACGACATCGAGAACCACCTGATTAGTGGACACAATATTGTGCAGCCGACGGATATTGAGGAAAATCGAACTATGCTCTTCACGATTGGTCAATCTGAAGTTTACCTCATCAGTCCTGACACCAAAAAAATAGCGTTGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCAGGGTATTAGACATGTGGACCACTTTGGGTTTATCTGCCGAGAGTCTTCGGGAGGTGGAGGCTTTCATTTCGTCTGTTACGTGTTTCAGTGCACAAATGAAGCTCTGGTAAGAATGAATTCTTCCAAAACCAAACTAGAACTCCAGAAGCACCTGACAACATTAACTAATCAGGAGCAAGCAACTATTTTTGAGGAGGTTCAGAAATTGAGACCAAGAAATGAGCAGCGAGAGAATGAATTGATTGTTTCTTTCCTGAGATGTTTATATGAAGAGAAACAAAAAGTTCACGTCCATGTTGGGGAGATAAAGCAGACATCACAGATTGCAGCGGAGAATATTGCAAGTGAATTACCATCTAGTGCCACTCGATTTAGGCTAGATATGCTGAAAAACAAAGCGAAGAGATCTTTAACGGAGTCTTTAGAAAGTATTTTGTCCCGGGGTAATAAAGCCAGAGGCCTCCAGGAGCACTCCGCCAGTCTGGATCTGGACAGCTCCGTGTCTAGCACATTAAGTAACACCAGCAAAGAGCCGTCTGTGTGTGAAAAGGAGGCCTTGCCCATCTCTGAGAGCTCCTTCAGACTCCTTGGCTCCTCGGATGACCTGTCCAGTGACTCAGAGAGCCACCCCGCGGAAGAGCCAGCCCTGCTCTCACCCCAGCAGGGCTTCAGAAGGCGTGCCAACACTCTGAGTCACGTCCCCGTGGAACGACAGGAACCTCTGCAGCCGGCACGGGGGTCTCCAGGGGTCTCGCAAAGGAAACTTGTGAGGTATCACTCAGTGAGCACAGAGACGCCTCATGAACGAAATGGGAATCATCCACCTGTTGGCGAGTCTAAAAGTGACTCAGGTCAGTCTTCAGCTCCTGCTCCTCCACCTCGTCTTACCCCCTCCGCCTCCTCGCCCAATTTTTTTAAGTACCTCAAACATTACCCAAGTGGAGAACAGAGTGGCAATGCTGTGCCGAAGAGCATCTCCTACCGTAATGCCCTGCGGAAAAAACTTCATTCTTCTTCCTCTGTGCCAAATTTTCTAAAATTTCTGGCTCCTGTAGATGAAAATAACACCTCTGACTTTATGAACACAAAAAGTTTAAAACATGCAGATGTTAAAACAGTCATCATTAGCAAGGACTTTGAGTCCAAAGCCAGCCATCTTGGTGACGCCAGCGGGACCCCCGTAAAGACACGGAGACACTCGTGGAGGCAGCAGATCTTCCTTCGAGTGGCCACCCCGCAGAAAGCCTGCGAATCTCCTGGCAGACACGAAGTGTTCCTTAATCAGAAAACATTTTTTCCTTATAAAAGCACAGCAAAACAGACCTCCAAAGATTACTTGAATTCCTCAGATTGCAAGACTGCATGTAGTGGAGACTCACTCTTGTCCCTCGACACACTTCTTCATGTCTCTTAG

Related Sequences

bmy_07388T0 Protein

Length: 712 aa      View alignments
>bmy_07388T0
MEVLELGLEESADASGESMEEHSRVKAPLLACSCQIKGNDHLVYTSNHRNNFYLKNLVPEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVAVAHRKAPPALIDECIEGFSHVSGGGFSSSDQLWAARQPPGDQERDPRPMRKSFSQPGLRSLAFRKEFQDAGLRSSSFFSSFEENDIENHLISGHNIVQPTDIEENRTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRHVDHFGFICRESSGGGGFHFVCYVFQCTNEALVRMNSSKTKLELQKHLTTLTNQEQATIFEEVQKLRPRNEQRENELIVSFLRCLYEEKQKVHVHVGEIKQTSQIAAENIASELPSSATRFRLDMLKNKAKRSLTESLESILSRGNKARGLQEHSASLDLDSSVSSTLSNTSKEPSVCEKEALPISESSFRLLGSSDDLSSDSESHPAEEPALLSPQQGFRRRANTLSHVPVERQEPLQPARGSPGVSQRKLVRYHSVSTETPHERNGNHPPVGESKSDSGQSSAPAPPPRLTPSASSPNFFKYLKHYPSGEQSGNAVPKSISYRNALRKKLHSSSSVPNFLKFLAPVDENNTSDFMNTKSLKHADVKTVIISKDFESKASHLGDASGTPVKTRRHSWRQQIFLRVATPQKACESPGRHEVFLNQKTFFPYKSTAKQTSKDYLNSSDCKTACSGDSLLSLDTLLHVS*