Sequence details bmy_07421 (Coding sequence)

Part of scaffold_310 (Scaffold)

For more information consult the page for scaffold_310 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HPGD ENSTTRG00000010463 (Bottlenosed dolphin)

Gene Details

hydroxyprostaglandin dehydrogenase 15-(NAD)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009917, Bottlenosed dolphin)

Protein Percentage 96.99%
cDNA percentage 97.99%
Ka/Ks Ratio 0.36704 (Ka = 0.0142, Ks = 0.0386)

BT.43717 ENSBTAG00000025942 (Cow)

Gene Details

15-hydroxyprostaglandin dehydrogenase

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027024, Cow)

Protein Percentage 95.86%
cDNA percentage 93.48%
Ka/Ks Ratio 0.08965 (Ka = 0.0211, Ks = 0.2357)

HPGD  (Minke Whale)

Gene Details

hydroxyprostaglandin dehydrogenase 15-(NAD)

External Links

Gene match (Identifier: BACU015241, Minke Whale)

Protein Percentage 97.04%
cDNA percentage 96.72%
Ka/Ks Ratio 0.16894 (Ka = 0.0144, Ks = 0.0855)

Additional orthologs identified in other species via the OPTIC pipeline.

HPGD (Human)  

Genome Location

Sequence Coding sequence

Length: 1083 bp    Location:839408..810311   Strand:-
Raw sequence 
>bmy_07421
CGCCCACTGGCAGGAGAGCGCGGCCGGGCAGCACGCGCGCGCGCAGGGTCCTTAAAAGCCGCGGCCGCGCGGAGGCGCCGAGCTCGCCCACCACGCGCAGGCGGCGACATGCACGTGAACGGCAAAGTGGCGCTGGTGACCGGCGCGGCCCAGGGCATCGGCCGAGCCTCCGCCGAGGCGCTGCTGCTCAAGGGCGCCAAGGTAGCGCTTGTCGATTGGAATCGTGAAGCAGGTTTAAAGTGTAAAGCTGCCCTGGATGAGCAGTTTGAACCTCAGAAGACTCTCTTCATCCAGTGCGATGTGGCCGATCAGGAACAGCTAAGAGATACTTTTAGGAAAGTTGTAGACCACTTTGGAAAACTGGACATTTTGGTGAATAATGCTGGAGTGAATAATGAGAAAAACTGGGAAAAAACTCTGCAAATTAATTTGGTTTCTGTCATCAGTGGAACCTACCTGGGTTTGGATTACATGAGCAAGCAAAATGGAGGTGAAGGTGGCATCATTATTAATATGTCCTCTTTAGCAGTGTATATCCTACAACGGCTGAATCTGCATTATCTGGATCTTAACTGGTCAGATGTCAACGGCTATGAGTACGTGGGCCACCTCCCTCGCTTAGTACCAGCGAAAGTCTTTGTGGTGTCCGTTTTGCTGTCTTATGGCTTAAAATTATTAAGAAGACACACACGAAAAGGAATCAGGCTGATGCCTGTTGCACAACAGCCTGTTTACTGTGCTTCCAAACATGGCATAGTCGGATTCACACGCTCGGCAGCGATGGCTGCTAATCTCATGAACAGTGGTGTCAGACTGAATGCCATTTGCCCAGGCTTTGTTAATACACCCATCCTCAAATCCATTGAAAAAGAAGAAAACATGGGACAATATATAGAATACACAGATCATATCAAGGATATGATGAAATACTATGGAATTTTGGACCCATCAATGATTGCCAATGGATTAATAACACTTATTGAAGACGACGCTTTGAATGGGGCTATAATGAAGATCACAACTTCTAAGGGAATTCATTTTCAAGATTATGATACAACCCCATTTCACACGAAAGCTCAGTGA

Related Sequences

bmy_07421T0 Protein

Length: 361 aa      View alignments
>bmy_07421T0
RPLAGERGRAARARAGSLKAAAARRRRARPPRAGGDMHVNGKVALVTGAAQGIGRASAEALLLKGAKVALVDWNREAGLKCKAALDEQFEPQKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAVYILQRLNLHYLDLNWSDVNGYEYVGHLPRLVPAKVFVVSVLLSYGLKLLRRHTRKGIRLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVNTPILKSIEKEENMGQYIEYTDHIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHFQDYDTTPFHTKAQ*