Part of scaffold_314 (Scaffold)

For more information consult the page for scaffold_314 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS28 ENSTTRG00000001941 (Bottlenosed dolphin)

Gene Details

vacuolar protein sorting 28 homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001823, Bottlenosed dolphin)

Protein Percentage 86.86%
cDNA percentage 88.0%
Ka/Ks Ratio 0.21496 (Ka = 0.0959, Ks = 0.446)

VPS28 ENSBTAG00000026320 (Cow)

Gene Details

Vacuolar protein sorting-associated protein 28 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000049263, Cow)

Protein Percentage 77.49%
cDNA percentage 76.61%
Ka/Ks Ratio 0.06849 (Ka = 0.1637, Ks = 2.3896)

VPS28  (Minke Whale)

Gene Details

vacuolar protein sorting 28 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU018548, Minke Whale)

Protein Percentage 88.89%
cDNA percentage 89.67%
Ka/Ks Ratio 0.18414 (Ka = 0.0757, Ks = 0.4113)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 576 bp    Location:366071..371322   Strand:+
>bmy_07561
ATGCGCCCCCTCAGGTATGACAACATGGCGGAGCTGTTTGCAGTTGTGAAGACGATGCAGGCCCTGGAGAAGGCATACATCAAGGACTGCGTCAGCCCCAACGAGTACACTGCGGCCTGCTCCCGGCTCCTGGTCCAGTACAAAGCTGCCTTCCGGCAGGTACAGGGGTCAGAGGTCAGCTCCATCGATGAATTCTGCCGCAAGTTCCGCCTGGACTGCCCGCTCGCCATGGAGAGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAGGGCAACCTGAATCGCTGCATTGCCGACGTTGTCTCGCTCTTCATCACAGTGATGGACAAGCTGCGCCTGGAGATCCGGGCCATGGACGAGATCCAGCCCGACCTGCGGGAGCTGATGGAGACCATGCACCGCATGAGCCACCTGCCCCCTGACTTCGAGGGCCGCCAGACGGTCAGCCAGTGGCTGCAGACCCTGAGCGGCATGTCAGCCTCAGACGAGCTGGACGACTCCCAGGTGCGCCAGATGCTCTTCGACCTGGAGTCAGCCTACAACGCCTTCAACCGCTTCCTGCACGCCTGA

Related Sequences

bmy_07561T0 Protein

Length: 192 aa      View alignments
>bmy_07561T0
MRPLRYDNMAELFAVVKTMQALEKAYIKDCVSPNEYTAACSRLLVQYKAAFRQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLHA*