Part of scaffold_314 (Scaffold)

For more information consult the page for scaffold_314 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TOP1 ENSTTRG00000004580 (Bottlenosed dolphin)

Gene Details

topoisomerase (DNA) I

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004376, Bottlenosed dolphin)

Protein Percentage 68.59%
cDNA percentage 67.29%
Ka/Ks Ratio 0.04373 (Ka = 0.2292, Ks = 5.2416)

BT.39255 ENSBTAG00000007960 (Cow)

Gene Details

DNA topoisomerase 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010466, Cow)

Protein Percentage 68.59%
cDNA percentage 67.01%
Ka/Ks Ratio 0.02551 (Ka = 0.227, Ks = 8.9002)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1857 bp    Location:1186280..1202504   Strand:+
>bmy_07610
TCAGCTGGGAGGTGGTCACGGGGCGTCCAGAGGGATGCGCAGGGAGGACCTGCGCGCAGGTGCGGCGTGAGAGTCGGAACCTTCTCGTGGGAAGAGGAGAAGGAGAGCCCAGGCGGCGTGAAGTGGACGCAGCTGGAGCACAGAGGCCCATGGTTCGCACCCCCGTACGAGCCGCTTCCTGAGGGAGTTTGCTTCTACTATGATGGGAAGCCCATGAAGTTGAGCTTAGCAGCCGAGGAGGTCGCCACGTTTTATGGGAAAATGCTGGATCACGAATATACAACAAAAGAAGTTTTCCAAAACAACTTCTTTAGCGACTGGCGGAAGGAAATGACAGCAGAAGAGAGGAAAGTGATCAAGCACCTGGACAAGTGTGACTTCACGGAGATCCACAGATACTTTGTGGACAGGACCGCCACCCGGAAGGCCCTGTCCAAGGAGGAGAAGCAGAAGCTCAAAGAAGAGGCGGAAAAACTTCAGCAAGAGTTCGGCTACTGTATCTTGGACGGGCACCGAGAGAAGATCGGCAATTTCAAGACCGAGCCCCCTGGGTTGTTCCGGGGCCGCGGCGACCACCCCAAGATGGGGATGCTGAAGAGGAGGGTCCTGCCGGAGGACGTGACCATCAACTGCAGCAGGGACTCCAAAGTACCCGAGCCTCCGGTAGGTCACCGGTGGAAGGAGGTGCGGTGTGACCGCACGGTCACGTGGCTGGCGGCATGGACAGAGAACGTGCAGAACTCCATCAAGTACATCATGCTGAACCCCAGCTCCAAGCTGAAGGGGGAGAGAGACTGGGAGAAGTATGAAGTGGCTCGGCGCTTGAAAGGGATTGTGGGCGAGATCCGTTCTCAGTACCGGGCCGACTGGAAGTCCCGAGAAATGAAGGCGAGACAACGCGCTGTGGCCCTTTATTTCATCGACAAGCTGGCGCTGCGAGCCGGGCACGAGAAGGAGGGCGAGACGGCTGACACGGTGGGCTGCTGCTCCCTCCGCGTGGAACACATCCAGCTGCACCCAAAGGCCGACGGCTGCCCGTACGTCGTGGAGTTCGACTTCCTGGGAAAGGACTCGATCCGCTACTACAACAGAGTGCCGGTGGAGAAGCCGGTGTACGAGAATCTGCAGCTGTTCATGGAGAACAAAGGCCCTGGGGCTGAGCTCTTTGACAGACTGACCACCGCCAGTCTGAACAAGCACCTGCAGGACCTGATGGATGGCCTGACGGCCAAGGTGTTCCGGACCTGCAACGCCAGCCTCACCCTGCAGGGCCAGCTGAGAGCGCTGACCAGAGCTGAAGACAGCGTAGCCGCTAAGATTCTGTCTTACAACCGAGCAAATCGGGCCGTTGCCGTTCTCTGCAACCATCAGCGGGCAACTCCCAAGACCTTCGAGAAGTCGATGAAGACTCTTCGGTTGAAGATTGAGGCGAAGGTGAAGCAGGTGGCCGAGGCCAAGGCAGAGCTGAAGAAGGCAAGGGCCGACCACAGATCCAGAGGGGACAGCAGGTCCAAGAGGCAAGTGTCCGGAGGCCCCAGCCCATCCAAGTCACGAGTGGAGCTGGGTGGTGCCAGCATGGGGGCTTGTGCCCCTCCTTCTCTCGCCAGCATCCTGGAGAAGAGGGGACGGCTGCTGGAGAAACTGGAGGAGCAGCTCGGGAGACTGAGCATGCAGGCCACAGACAAGGAGGAGAGCAAGCAGGTGGCCCTGGGCACGTCCAAGCTCAACTACCTGGACCCCCGGATCAGTGTCGCCTGGTGTAAGAGGTTTGGGGTGCCCGTGGAGAAGATCTACAACAAGACACAGAGGGAGAAGTTCGCCTGGGCTCTCGACACGGCAGGCGAAGACTTTGAATTC

Related Sequences

bmy_07610T0 Protein

Length: 619 aa      View alignments
>bmy_07610T0
SAGRWSRGVQRDAQGGPARRCGVRVGTFSWEEEKESPGGVKWTQLEHRGPWFAPPYEPLPEGVCFYYDGKPMKLSLAAEEVATFYGKMLDHEYTTKEVFQNNFFSDWRKEMTAEERKVIKHLDKCDFTEIHRYFVDRTATRKALSKEEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVLPEDVTINCSRDSKVPEPPVGHRWKEVRCDRTVTWLAAWTENVQNSIKYIMLNPSSKLKGERDWEKYEVARRLKGIVGEIRSQYRADWKSREMKARQRAVALYFIDKLALRAGHEKEGETADTVGCCSLRVEHIQLHPKADGCPYVVEFDFLGKDSIRYYNRVPVEKPVYENLQLFMENKGPGAELFDRLTTASLNKHLQDLMDGLTAKVFRTCNASLTLQGQLRALTRAEDSVAAKILSYNRANRAVAVLCNHQRATPKTFEKSMKTLRLKIEAKVKQVAEAKAELKKARADHRSRGDSRSKRQVSGGPSPSKSRVELGGASMGACAPPSLASILEKRGRLLEKLEEQLGRLSMQATDKEESKQVALGTSKLNYLDPRISVAWCKRFGVPVEKIYNKTQREKFAWALDTAGEDFEF