Part of scaffold_313 (Scaffold)

For more information consult the page for scaffold_313 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IFT80 ENSTTRG00000000075 (Bottlenosed dolphin)

Gene Details

intraflagellar transport 80 homolog (Chlamydomonas)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000067, Bottlenosed dolphin)

Protein Percentage 99.37%
cDNA percentage 98.94%
Ka/Ks Ratio 0.06263 (Ka = 0.0027, Ks = 0.0433)

IFT80 ENSBTAG00000031572 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042227, Cow)

Protein Percentage 85.85%
cDNA percentage 87.6%
Ka/Ks Ratio 0.27157 (Ka = 0.0936, Ks = 0.3448)

IFT80  (Minke Whale)

Gene Details

intraflagellar transport 80 homolog (Chlamydomonas)

External Links

Gene match (Identifier: BACU012265, Minke Whale)

Protein Percentage 95.4%
cDNA percentage 96.3%
Ka/Ks Ratio 0.48521 (Ka = 0.032, Ks = 0.0659)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1893 bp    Location:350181..275109   Strand:-
>bmy_07621
ACACCAGTGTATTCAGTAGCATGGGGCCCTGATTCGGAAAAGGTTCTCTACACAGCAGGCAAACAGCTGATCATTAAACCTCTTCAACCAAATGCTAAAGTTTTACAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTAGACTGGAACTCAGTCAATGATTTAATTTTATCTGCTGGCGAAGACTGTAAATATAAGGTATGGGATAGCTACGGCCGCCCTCTGTACAGTTCACAACCTCATGAGCATCCTATTACCTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCATTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCATATGCTTTAGAAAAGCCCAACACTGGCAGCATATTTAATATCGCATGGTCAATTGATGGCACCCAGATTGCTGGAGCCTGTGGAAATGGACATGTTGTTTTTGCACATGTGGTGGAGCAACGTTGGGAGTGGAAAGATTTTCAAGTAACGTTAACTAAAAGAAGGACCATGCAGGTTCGTAACGTTCTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCCTCTTTGAACTATGCACACTTAGTTGTTTCAACGTCTCTTCAGTGTTATGTGTTCTCTACGAAGAACTGGAATACACCACTTATATTTGATCTCAAAGAAGGAACTGTTAGTTTAATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGACGGTGGTGGTATCTATTTATATTCTTATGAAGGGCGCTTCCTTTCCTCTCCAAAATTTCCTGGAATGAGAACAGATATTCTAAATGCACAGACGGTCTCTCTGAGTAATGATACCATAGCAATAAAAGACAAAGCTGATGAAAAATTAATCTTCCTCTTTGAGGCATCAACTGGAAAACCACTGGGAGATGGGAAGCTTCTTTCTCATAAGAATGAAATTTTGGAAATTGCTCTAGATCAAAAGGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCAGTGAAACGATTTGGGAAGGAAGAACAAATTATCAAACTTGGAACAATGGTGCATACTCTGGCGTGGAGTGATACATGCAACATCCTCTGTGGACTTCAAGATACTCGATTTACAGTGTGGTATTACCCCAATACGGTTTATGTGGACAGAGACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATCGTGAGTTTTGTTGGAAATCAGGTAACTATAAGAAGAGCTGATGGCTCACTGATTCACATCAGCATATCACCATATCCTGCTATTCTCCACGAATACGTAAGCAGTTCAAAATGGGAAGACGCTGTAAGACTTTGTCGTTTTGTTAAGGAGCAAACCATGTGGGCTTGCCTAGCTGCTATGGCAGTCGCTAATCGAGATATGACTACTGCAGAAATAGCCTACGCAGCAATTGGTGAAATTGATAAGGTTCAATACATCAATTCTATCAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATATTAATGTTTAGTGGGAACATACAGGAGGCTGAAATGGTTCTTCTTCAGGCTGGCCTTGTTTATCAAGCCATTCAGATCAATATTAATCTCTACAACTGGGAAAGGGCACTTGAATTAGCTGTTAAATACAAAACACATGTTGATACAGTGCTTGCCTACCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACCTGCAGTATGCAGAAGGTCTCGAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACTAAAGAAAGAGAGCGATCCTCAAGCAGCCAGCCCAGCAAGAATATTGGTCTTAAGCACTAA

Related Sequences

bmy_07621T0 Protein

Length: 631 aa      View alignments
>bmy_07621T0
TPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYSSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVEQRWEWKDFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSLQCYVFSTKNWNTPLIFDLKEGTVSLILQAERHFLLVDGGGIYLYSYEGRFLSSPKFPGMRTDILNAQTVSLSNDTIAIKDKADEKLIFLFEASTGKPLGDGKLLSHKNEILEIALDQKGLTNDRKIAFIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWSDTCNILCGLQDTRFTVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFVGNQVTIRRADGSLIHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVANRDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILMFSGNIQEAEMVLLQAGLVYQAIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQYAEGLEIDWEKIKAKIEMEITKERERSSSSQPSKNIGLKH*