Part of scaffold_338 (Scaffold)

For more information consult the page for scaffold_338 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LIMA1 ENSTTRG00000001015 (Bottlenosed dolphin)

Gene Details

LIM domain and actin binding 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000954, Bottlenosed dolphin)

Protein Percentage 97.62%
cDNA percentage 98.19%
Ka/Ks Ratio 0.29746 (Ka = 0.011, Ks = 0.0371)

LIMA1 ENSBTAG00000012342 (Cow)

Gene Details

LIM domain and actin-binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016376, Cow)

Protein Percentage 89.08%
cDNA percentage 92.19%
Ka/Ks Ratio 0.31825 (Ka = 0.054, Ks = 0.1696)

LIMA1  (Minke Whale)

Gene Details

LIM domain and actin binding 1

External Links

Gene match (Identifier: BACU008019, Minke Whale)

Protein Percentage 99.08%
cDNA percentage 99.34%
Ka/Ks Ratio 0.23886 (Ka = 0.0035, Ks = 0.0147)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2283 bp    Location:1313976..1371403   Strand:+
>bmy_07777
ATGGAATCAACTCCATTTACTAGACGGCAATGGACTTCACTATCATTGAGGGTTACGGCCAAAGAACTTTCTCTTGTCAACAAGAACAAGTCATCGGCTATTGTGGAAATATTCTCCAAGTACCAGAAAGCAGCTGAAGAAGCAAACATGGAAAAGAGGAGAAGTAACACTGAAAATCTCCCCCAGCACTTTAGAAGGGGGAACCTGACCGTGTTAAAGAAGAAGTGGGAGAACCCAGTGCTGGGAGCAGACTCTCTCCCAGACTCCGTGCGAAACAGCAGCACCGAGGTCAGGCATAGAGGCGACCCTCCTCCCGCTGAAGTGGCAAACAGCTCTGCCTCTGGGGTCGAGGCTGAGCAAGAGGAACGAGTCCACCCCAGACCTAGAATCAAATCGCCTCCTGAAGCCCTTATTCAGTATCCGTACCCCCGCATCGAGGACAGTGAGCATCTTCAAGACCACTCAGCAGAAAGTAAAAAAATGGAAAATTGTCTGGGAGAATCCAGGCATGAAGTAGGAAAACCCGAAATAAGTGAAAATGCAGAAGCTGCAAACAAAATAGAGAAATACAATGTTCCGCTGAACAGGCTTAAGATGATGTTTGAGAAAGGTGAACCAACTCAAACCAAGATTCTTCGGGCCCAAAGCCGAAGTGCAGGTGGAAGAAAGATCTCTGAAAACAGCTATTCTCTGGATGACTTGGAAATAGGCCCAGGTCAGTTGTCACCTTCAGCATTCAACTCAGAGAAAAGCGAGAGTAGGCGAAATCTGGAGTTCCCACGCCTGTCAGAAACCTCCATAAAGGATCGAATGGCCAAGTACCAGGCAGCTGTGTCCAAACAAAGCAGTTCCACCAACTATACAAATGAGTTGAGAGCTAGTGGTGGTGAAATCAAAACTCATAAATTGGAGCAAAAGGAGAATGTGCCCCCGGGTCCTGAGGTCTGCATCGCCCATCAGGATGGAGAAAAGGTTTCTGCATCTGAGAATAGCCTGGCAGCCCCTTCCACCCCTGCTGAAGATGATTCCCGTAACTCCCAGGTTAAGAGTGAGTTCCAGCAGCCTGTGCATCCCAAGCCACTAAGTCCAGATGCCAGAGCCTCCGGCCTTTCTGAAAGTTCTCCTCCCAAAGCAGTGAAGAAGTTTCAGGCACCTGCAAGAGAGACCTGCGTGGAATGTCAGAAAACAGTCTACTCGATGGAGCGTCTCTTGGCCAACAAGCAGGTGTTTCACATCAGCTGCTTCCGTTGTTCCTATTGCAACAACAAACTTAGTCTAGGAACATATGCCTCTTTACATGGGAGAATCTATTGCAAGCCTCACTTCAATCAACTCTTTAAATCTAAAGGCAACTATGATGAAGGCTTTGGACACAGACCACACAAGGATCTGTGGGCAAGCAAAAATGAAAACGAAGAGACATTGGAGAGACCAGCCCAGCTTCCAAATGCAGGGGAGACCCCTCAGAGCCCAGGGGTAGAAGATGCCCCCATTGCTAAGGTTGGTGTGCTGACTGCAAGTATGGAAGCCAAGGCCTCGTCCCCGCTGGAGAAAGAAGACAAGCCAGCTGAAACCAAGAAGCTGAGGATTGCCTGGCCGCCCCCTACTGAACTTGGCAGTTCAGGAAGTGCCTTGGAGGAAGGTATCAAAGTATCGAAGCCTAAATGGCCTCCTGAGGATGAAATCAGCAAGCCTGAAGCTCCTGAGGATGTAGATCTGGATCTGAAGAAGCTAAGACGAACTTCTTCACTGAAGGAGAGAAGCCGCCCATTCACTGTAGCAGCTTCATTTCGAACCTCTTCAGTCAAGAGCCCCAAAACCTTGTCCCCACCTATCAGGAAAGGCTGGAGCATGTCAGAGCAGAGTGAGGAGTTTGGAGGAGGTGTAGTAGCAGAAAGGAAACAAATGGAAAATGCCAATGYCTCCGAGAAGAATGAGAGTGTGGAAAAAACAACCTGGCCAAACAAGGGATCTAGAGGAGAGGAGGCAGGAAGGAGAAGTAAGGAAGTTCACAGTTTTGAGATGGGGAGTGAAAATCTTATAGAAAATGGTGCAAACTTAGATGAAGGTGATAGAAACCTTCTCACACAGCAGTCTTCACTAGAACCCAAGTCTAAAAATTGGTCTAGCTTTGCAGACAACACCTCCACTAAAGAATTCACTACTCAGAATCAGAAATCCCAGGATGTGGGATTCTGGGAGGGAGAAGTAGTCAAAGAGCTCTCTGTGGAGGAACAGATAAAGAGAAATCGGTACTATGATGAGGATGAAGATGAGGAATAA

Related Sequences

bmy_07777T0 Protein

Length: 761 aa      View alignments
>bmy_07777T0
MESTPFTRRQWTSLSLRVTAKELSLVNKNKSSAIVEIFSKYQKAAEEANMEKRRSNTENLPQHFRRGNLTVLKKKWENPVLGADSLPDSVRNSSTEVRHRGDPPPAEVANSSASGVEAEQEERVHPRPRIKSPPEALIQYPYPRIEDSEHLQDHSAESKKMENCLGESRHEVGKPEISENAEAANKIEKYNVPLNRLKMMFEKGEPTQTKILRAQSRSAGGRKISENSYSLDDLEIGPGQLSPSAFNSEKSESRRNLEFPRLSETSIKDRMAKYQAAVSKQSSSTNYTNELRASGGEIKTHKLEQKENVPPGPEVCIAHQDGEKVSASENSLAAPSTPAEDDSRNSQVKSEFQQPVHPKPLSPDARASGLSESSPPKAVKKFQAPARETCVECQKTVYSMERLLANKQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEETLERPAQLPNAGETPQSPGVEDAPIAKVGVLTASMEAKASSPLEKEDKPAETKKLRIAWPPPTELGSSGSALEEGIKVSKPKWPPEDEISKPEAPEDVDLDLKKLRRTSSLKERSRPFTVAASFRTSSVKSPKTLSPPIRKGWSMSEQSEEFGGGVVAERKQMENANXSEKNESVEKTTWPNKGSRGEEAGRRSKEVHSFEMGSENLIENGANLDEGDRNLLTQQSSLEPKSKNWSSFADNTSTKEFTTQNQKSQDVGFWEGEVVKELSVEEQIKRNRYYDEDEDEE*