Sequence detailsbmy_07806 (Coding sequence)

Part of scaffold_331 (SequenceType object (1))

For more information consult the page for scaffold_331 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CTSFENSTTRG00000006666 (Bottlenosed dolphin)

Gene Details

cathepsin F

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006312, Bottlenosed dolphin)

Protein Percentage 95.24%
cDNA percentage 96.9%
Ka/Ks Ratio 0.34754 (Ka = 0.0236, Ks = 0.0679)

CTSFENSBTAG00000010994 (Cow)

Gene Details

cathepsin F precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000014587, Cow)

Protein Percentage 90.71%
cDNA percentage 92.62%
Ka/Ks Ratio 0.16871 (Ka = 0.0427, Ks = 0.2532)

CTSF (Minke Whale)

Gene Details

cathepsin F

External Links

Gene match (Identifier: BACU003517, Minke Whale)

Protein Percentage 94.84%
cDNA percentage 95.92%
Ka/Ks Ratio 0.2704 (Ka = 0.0296, Ks = 0.1094)

Additional orthologs identified in other species via the OPTIC pipeline.

CTSF (Human)   Ctsf (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1263 bp    Location:503903..498664   Strand:-
Raw sequence 
>bmy_07806
ATGGCGCCCTGGCTGCAGCTGCTGTTGCTTTTGGGGCTGCTCCCGGGCGCCGCTCCGGCCCCCAACGAGCCCCGAACGGCCGGTGCGCAGGCCTGGGAGCTGGCGTCCCCGGAGCTGCTGGAGCCCGCCCGCTTCGCCCTAGAGATGTACAACCGCGGCCGGGCTGCCAGGACGCGGGCCGCGCTGAGGGTCGTGCGCGGTCGCGTCCGCCGGGCGGGCCGGGGGTCGCTGTACTCCCTGAAGGCGACCCTGGTGGAGCCGCCCTGCAACGACCCCACGGTGTGCCAGCTCCCTGTGTCCAAGAAAACCCTGCTTTGCAGCTTTGAAGTCCTGAATGAGCTGGGGAAACACATGCTGCTGAGGCGGGACTGTGGCCCAGTGGATACCAAGATTACAGATGACAAAAATGAGACTTTCAGTTCATTCCTTCCACTGTTGAACAAGGATCCCCTGTCCCAGGACTTTTCTGTGAAGATGGCTTCAATCTTCAAGGACTTTGTCACCACCTATAACCGGACATATGATACGAAGGAGGAAGCCAGGTGGCGCATGTCCGTCTTTGCCAATAACATGGTGCGAGCGCAGAAGATCCAGGCCCTGGACCGTGGCACAGCTCGGTATGGGGTCACCAAGTTCAGTGACCTTACAGAGGAGGAGTTCCGCACCATCTACCTGAATCCCCTCCTAAAAGAGGAGCCTGGCAAGAAGATGCGCCTGGCCCAGTCCATCCCTGACCTTCCTCCACCTGAGTGGGACTGGAGGAGTAAGGGGGCTGTCACCAAAGTCAAGGACCAGGGCATGTGCGGCTCCTGCTGGGCCTTCTCAGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAAACGGGGGGCCCTGCTCTCCCTCTCTGAGCAGGAGCTCTTGGACTGTGACAAGGTGGACAAGGCCTGCCTGGGCGGCTTGCCCTCCAGCGCCTACTCGGCCATAAGGACTCTGGGAGGGCTGGAGACAGAGGACGACTACAGCTACCGCGGCCACTTGCAGACCTGCAGCTTCTCTGCAGAGAAGGCCAAGGTCTACATCAACGACTCAGTGGAGCTGAGCCAGAATGAGCAAAAGCTGGCGGCCTGGCTGGCCAAGAAGGGCCCCATCTCCGTCGCCATCAACGCCTTTGGCATGCAGTTCTACCGCCACGGGATCTCCCACCCACTGCGGCCCCTCTGCAGCCCCTGGCTCATCGACCACGCTGTGCTGCTCGTGGGCTACGGCAACCGTGAGTTCCGCTGA

Related Sequences

bmy_07806T0 SequenceType object (3)

Length: 421 aa      View alignments
>bmy_07806T0
MAPWLQLLLLLGLLPGAAPAPNEPRTAGAQAWELASPELLEPARFALEMYNRGRAARTRAALRVVRGRVRRAGRGSLYSLKATLVEPPCNDPTVCQLPVSKKTLLCSFEVLNELGKHMLLRRDCGPVDTKITDDKNETFSSFLPLLNKDPLSQDFSVKMASIFKDFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDRGTARYGVTKFSDLTEEEFRTIYLNPLLKEEPGKKMRLAQSIPDLPPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKRGALLSLSEQELLDCDKVDKACLGGLPSSAYSAIRTLGGLETEDDYSYRGHLQTCSFSAEKAKVYINDSVELSQNEQKLAAWLAKKGPISVAINAFGMQFYRHGISHPLRPLCSPWLIDHAVLLVGYGNREFR*