Part of scaffold_325 (Scaffold)

For more information consult the page for scaffold_325 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RDH12 ENSTTRG00000015448 (Bottlenosed dolphin)

Gene Details

retinol dehydrogenase 12 (all-trans/9-cis/11-cis)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014631, Bottlenosed dolphin)

Protein Percentage 97.47%
cDNA percentage 98.31%
Ka/Ks Ratio 0.37294 (Ka = 0.0111, Ks = 0.0297)

RDH12 ENSBTAG00000012838 (Cow)

Gene Details

retinol dehydrogenase 12 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017058, Cow)

Protein Percentage 92.09%
cDNA percentage 92.19%
Ka/Ks Ratio 0.20987 (Ka = 0.042, Ks = 0.2003)

RDH12  (Minke Whale)

Gene Details

retinol dehydrogenase 12 (all-trans/9-cis/11-cis)

External Links

Gene match (Identifier: BACU020326, Minke Whale)

Protein Percentage 99.37%
cDNA percentage 99.26%
Ka/Ks Ratio 0.06982 (Ka = 0.0015, Ks = 0.0208)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 951 bp    Location:1273658..1283708   Strand:+
>bmy_07911
ATGCTGGTTTTCTTAGGACTGCTCACCTCCTTCCTTTCTTTCCTGTATGTGACAGCTCCATCCATCAGGAAGTTCTTTGCTGGTGGGGTCTGTGGAACAAACATGCAGCTTCCCGGGAAGGTGGTGGTGATCACCGGTGCCAACACAGGCATCGGCAAGGAGACAGCCAGAGAGCTTGCTCGCAGAGGAGCCCGAGTATACATTGCCTGCCGAGATGTACTGAAGGGGGAGTCTGCTGCCAGTGAAATCCGAGCTGATACAAAGAACTCCCAGGTGCTGGTACGGAAACTGGACCTATCTGATACCAAATCCATCCGAGCCTTTGCTGAGGGCTTCCGGGCAGAGGAAAAGCAGCTTCATATTCTGATCAACAATGCAGGAGTGATGATGTGCCCATATTCCAAGACAGCTGATGGCTTTGAAACCCACCTGGGAGTCAACCACCTGGGCCACTTCCTTCTCACCCACTTGCTCCTGGGGCAGCTGAAGGAGTCTGCTCCTGCACGGGTGGTGAACCTGTCATCAGTGGTCCACCTCGCTGGCAAGATTCGCTTCCATGACCTCCAGGGTGAGAAGTCCTACAACCGGGGTTTTGCTTATTGCCACAGCAAGCTGGCCAATGTGCTCTTTACTCGTGAGCTGGCCAAGAGGCTCCAAGGCACAGGGGTCACCACCTACGCAGTGCACCCAGGCATCGTCCGCTCCGAACTGGTCCGACACTCCTTCCTGCTGTGCCTGCTCTGGAGGCTCTTCTCCCCCTTCCTCAAGACGGCGAGGGAGGGGGCCCAGACCAGCCTGCACTGCGCCCTGACTGAGGGCTTGGAGCCCCTGAGCGGCAAGTACTTCAGTGACTGCAAGAAGACTTGGGTGTCTCCAAGGGCCCGGAATAMCAAAACGGCTGAGCGCTTGTGGAACGTCAGCTGCGAGCTGCTGGGAATCCGGTGGGAGTAG

Related Sequences

bmy_07911T0 Protein

Length: 317 aa      View alignments
>bmy_07911T0
MLVFLGLLTSFLSFLYVTAPSIRKFFAGGVCGTNMQLPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFRAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTHLLLGQLKESAPARVVNLSSVVHLAGKIRFHDLQGEKSYNRGFAYCHSKLANVLFTRELAKRLQGTGVTTYAVHPGIVRSELVRHSFLLCLLWRLFSPFLKTAREGAQTSLHCALTEGLEPLSGKYFSDCKKTWVSPRARNXKTAERLWNVSCELLGIRWE*