Sequence detailsbmy_07929 (Coding sequence)

Part of scaffold_339 (SequenceType object (1))

For more information consult the page for scaffold_339 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MMP20 (Minke Whale)

Gene Details

matrix metallopeptidase 20

External Links

Gene match (Identifier: BACU014499, Minke Whale)

Protein Percentage 61.95%
cDNA percentage 70.21%
Ka/Ks Ratio 0.66972 (Ka = 0.3512, Ks = 0.5244)

Additional orthologs identified in other species via the OPTIC pipeline.

MMP20 (Cow)   MMP20 (Human)   Mmp20 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 684 bp    Location:1308402..1299133   Strand:-
Raw sequence 
>bmy_07929
ATGGATGTGATCAAGAGGCCTCGCTGTGGAGTTCCTGATGTGGCAAACTATTGCCTCTTCGCAGGTGAATCCAAATGGAAAAAAAATACTTTGACATACAGAATATCCAAATACACACCTTCCATGACTTCTGCAGAAGTGGACAAAGCAGTGGAGATGGCCCTGCAGGCCTGGAGTAGTGCCGTTCCTCTGAGCTTTGTCAGAATAAACTCAGGAGAAGCAGATATTATGATATCTTTTGAAACTGGAGATCACGGGGATTCCTATCCATTCGATGGGCCTCGGGGGACTCTAGCCCATGCATTTGCACCTGGAGAAGGCCTGGGAGGAGATACACATTTCGACAATGCTGAGAAGTGGACTATGGGAATGAATGGTTTCAATTTATTCACCGTTGCTGCTCATGAATTTGGCCACGCACTGGGCCTGGCCCATTCCACAGACCCATCAGCACTGATGTACCCAACTTATAAGTATCAGCATCCCTATGGATTCCACCTTCCCAAGGATGATGTGAAAGGGATCCAGGCACTGTACGGACCTCGGAAGACATTCCCAGGGAAGCCCGCTGTGCCCCACAGCCCCCCTCATAATCCTTCTATCCCTGACCTCTGTGACTCCAGCTCAGCCTTTGATGCTGTGACAATGCTGGGAAAGGAGCTCCTGTTCTTCAGGGACCGGTAA

Related Sequences

bmy_07929T0 SequenceType object (3)

Length: 228 aa      
>bmy_07929T0
MDVIKRPRCGVPDVANYCLFAGESKWKKNTLTYRISKYTPSMTSAEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGMNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQHPYGFHLPKDDVKGIQALYGPRKTFPGKPAVPHSPPHNPSIPDLCDSSSAFDAVTMLGKELLFFRDR*