Sequence detailsbmy_07952 (Coding sequence)

Part of scaffold_329 (SequenceType object (1))

For more information consult the page for scaffold_329 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PTPRRENSTTRG00000004843 (Bottlenosed dolphin)

Gene Details

protein tyrosine phosphatase, receptor type, R

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004565, Bottlenosed dolphin)

Protein Percentage 73.39%
cDNA percentage 74.88%
Ka/Ks Ratio 0.54031 (Ka = 0.089, Ks = 0.1646)

PTPRRENSBTAG00000015311 (Cow)

Gene Details

receptor-type tyrosine-protein phosphatase R isoform 2 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020359, Cow)

Protein Percentage 86.42%
cDNA percentage 87.09%
Ka/Ks Ratio 0.32749 (Ka = 0.0995, Ks = 0.3037)

PTPRR (Minke Whale)

Gene Details

protein tyrosine phosphatase, receptor type, R

External Links

Gene match (Identifier: BACU016426, Minke Whale)

Protein Percentage 92.6%
cDNA percentage 93.46%
Ka/Ks Ratio 0.45344 (Ka = 0.0548, Ks = 0.1209)

Additional orthologs identified in other species via the OPTIC pipeline.

PTPRR (Human)   Ptprr (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1776 bp    Location:82964..173768   Strand:+
Raw sequence 
>bmy_07952
ATGGTAGCATCAGGAGCAGGAACAAGCAGCAACAATAGTTCTAACAGTAGCAGCAGCAGTGTTAGCTACCAAAGACGAGGGTCCAACGTATCTCTTACCCTGGACATGAGTAGCTTGGGGAATGTTGAACCCTTTGTGGCCACACCAACCCCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGTATTCTCACAAGGTCACAGCTCAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGACATTCCATGTCATGGAACTAAAAATCGCTATAAGACCATTTTGCCAAATCCCCTCAGCAGAGTATGTTTAAGACCAAAAAATGTAACTAATTCTTTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAAGAGAAAGCGTTCATCGCCACGCAGGGCCCCATGATCAACACTGTGAATGATTTCTGGCAGATGGTTTGGCAGGAGGACAGTCCCGTGATTGTTATGATCACAAAACTCAAGGAAAAAAATGAGAAATGTGTGCTTTACTGGCCAGAAAAGAGAGGAATATATGGGAAAGTCGAGGTTCTGGTTATCAATGTAAATGAATGTGATAACTACACCGTTCGAAACCTTGTCTTAAAGCAAGGAAGTCACACGCAACATGTGAAGCATTACTGGTACACCTCATGGCCCGATCACAAGACTCCAGCCAGTGCCCAGCCCCTTCTACAGCTCATGCTGGATGTGGAAGAAGACAGACTTGCCTCCGTGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGGATAGGCAGGACGGGGTGTTTTATTGCTACATCCATCGGCTGTCGACAGTTGAGAGAAGAAGGAGTTGTGGACGCGCTGAGCATCGTCTGCCAGCTGCGTGTGGACAGATCAGGGATTGAACAGGATTTTGGTTTACTTATTTTCAGAACACTTGAAGCGAAGCATGAACAGTCGTTAAGTGGAAAATGGAGGCTGAATTTTACGTGGCGATTCTTACCTGCTTCATCTTCGGGAACTCAGGTGAAGGGGTTTCAGATTGTCCATGTCCAGAAACAACAGTGCCTTTTCAAAAATGAGAGAGTGGTCATGGACTTGTGCAATGGGACCAGCCAGAACCAGCAGTGGATGTGGACTGAGGATGGAAAGCTCCTTCATGTTAAATCTGCTCTGTGCCTGGGCATCTCTGATTCTTCTGGTGGCCCTTCCCGATCCGCCATCTTTGCCCCCTGCTCCCGGGCACCTCGATGGACTTGCTATGAGAARGAAGGGTTCCTTGAGGTGGAAAATGCCTCTCTCTTTCTCAAGAAACAAGGCTTCAGGGTAGTGGTCAAGAAGGGCAGGAAGTACCTCCACAGCTGGATGAAAATAGATGTCAACGAAGAGGGAAAACCAGTCAATGAAAGCCTCTGCTCTAAAAAAGCTGGCCTGGGAGCGGAAGTCTCTGTAAGGAGCACTAGAAACACAACTCCTCCCCAAATCCCCACTACTTTTAATGCACTTCCATATAGCCCGGGACACCTTATTAGTAATACCACAGAGACCTTCACCAGAAGTACTACAGAAAACTACAGCCAAAACAGCAGCCAGAGGCAGCACCCCGATCTGCAGATGGCTGGAACTACATCTTGGGTTCCCTGGACTACTCAACCCTTCTCCAGCACCACTGAAGAGTTTCATTCAGGGGCTAATTATCCAGTTCATTTTTCTCCTTTCTAA

Related Sequences

bmy_07952T0 SequenceType object (3)

Length: 592 aa      View alignments
>bmy_07952T0
MVASGAGTSSNNSSNSSSSSVSYQRRGSNVSLTLDMSSLGNVEPFVATPTPREKVAMEYLQSASRILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPCHGTKNRYKTILPNPLSRVCLRPKNVTNSLSTYINANYIRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVINVNECDNYTVRNLVLKQGSHTQHVKHYWYTSWPDHKTPASAQPLLQLMLDVEEDRLASVGRGPVVVHCSAGIGRTGCFIATSIGCRQLREEGVVDALSIVCQLRVDRSGIEQDFGLLIFRTLEAKHEQSLSGKWRLNFTWRFLPASSSGTQVKGFQIVHVQKQQCLFKNERVVMDLCNGTSQNQQWMWTEDGKLLHVKSALCLGISDSSGGPSRSAIFAPCSRAPRWTCYEKEGFLEVENASLFLKKQGFRVVVKKGRKYLHSWMKIDVNEEGKPVNESLCSKKAGLGAEVSVRSTRNTTPPQIPTTFNALPYSPGHLISNTTETFTRSTTENYSQNSSQRQHPDLQMAGTTSWVPWTTQPFSSTTEEFHSGANYPVHFSPF*