Sequence detailsbmy_07976 (Coding sequence)

Part of scaffold_332 (SequenceType object (1))

For more information consult the page for scaffold_332 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA4DENSTTRG00000003357 (Bottlenosed dolphin)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003147, Bottlenosed dolphin)

Protein Percentage 92.35%
cDNA percentage 92.31%
Ka/Ks Ratio 0.15647 (Ka = 0.0228, Ks = 0.146)

SEMA4DENSBTAG00000001941 (Cow)

Gene Details

semaphorin-4D precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000002525, Cow)

Protein Percentage 74.01%
cDNA percentage 77.19%
Ka/Ks Ratio 0.27878 (Ka = 0.2038, Ks = 0.7311)

SEMA4D (Minke Whale)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D

External Links

Gene match (Identifier: BACU015638, Minke Whale)

Protein Percentage 96.04%
cDNA percentage 96.11%
Ka/Ks Ratio 0.25202 (Ka = 0.0266, Ks = 0.1054)

Additional orthologs identified in other species via the OPTIC pipeline.

SEMA4D (Human)   Sema4d (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2718 bp    Location:821523..844753   Strand:+
Raw sequence 
>bmy_07976
ATGAGGATGTGCGCCCCCGTCGGGGGGCTGCTCACCGCCCTCGCCGTGGTGTTTGGGACAGCAGTGGCGTTTGCACCCATACCTAGGATCACCTGGGAGCACAGAGAGGTGCAGCTGGTGCAGTTTCACGAGCCGGGCATCTTCAACTACTCGGCCTTGCTGCTGAGTGAGGACAAGGACACCTTGTACGTGGGCGCCCGGGAAGCCGTGTTTGCCTTGAACGCACACAATATCTCCAAGAAGCAGCATGAGGCATATTGGAAGGTCTCAGAAGATAAAAAAGCAAAATGCGCAGAAAAGGGGAAATCAAAACAGACAGAATGCCTTAACTACATCCGGGTGCTGCAGCCCCTCAGCGCCAGTGCCCTTTACGTGTGCGGGACCAACGCGTTCCAGCCAGCCTGTGACCACCTGAACTTAACATCCTTTAAATTTCTGGGCAAAAATGAAGATGGCAAAGGAAGGTGTCCCTTCGACCCAGCACAAAGCTACACGTCCGTCATGGTTGATGGAGAGCTTTATTCTGGGACGTCGTATAACTTTTTGGGAAGCGAACCCATCATCTCCCGAAATTCTTCCCACAGTCCTCTGAGAACGGAATATGCGATTCCTTGGCTTAACGAGCCCAGCTTCGTGTTTGCTGACGTGATAGGAGAGAGCCCGGAGGGCGGGGACGGCGAGGACGACAAGGTCTACTTCTTCTTCACGGAGGTGTCTGTGGAGTACGAGTTCATCTTCAAGCTGATGATCCCACGGGTAGCGAGGGTCTGCAAGGGGGACCAGGGCGGCCTGAGGACCTTACAGAAGAAGTGGACCTCCTTCCTGAAGGCCAGGCTGATCTGCTCCCGGCCGGACAGCAACCTCGTCTTCAACGTGCTGCGAGACGTCTTTGTCCTCAGGTCTCCCAGCCTGAAGGAGCCCATGTTCTATGGGGTCTTCACCCCACAGCTGAACAACGTGGGGCTCTCGGCCGTGTGCGCCTACAACCTGTCCACAGCCGAGGCGGTCTTCTCCCGTGGGAAGTACATGCAGAGCGCCACGGTGGAGCAGTCCCACACCAAGTGGGTGCGCTACAACGGGGCCGTGCCCACGCCGCGGCCCGGGGCGTGCATCAACCGGGAGGCGCGTGCCGCCAACTTCTCCAGCTCCCTCAACCTACCAGACAAGACTCTGCAGTTTGTCAAAGACCACCCTCTGATGGATGACTCCGTGACCCCAATAGACAACAGGCCCCGGCTGATCAAGAGTGACGTGAACTACACACAGATCGTGGTGGACAGGACCCGGGCCCTGGATGGGACAGTCCATGACGTCATGTTTGTCAGCACAGGTGGGTCCCGGGCCCTGGGTAAGAACATGGACCGGGGTGCCCTGCACAAAGCCATCAGCCTTGAGAACGACGTCCACATCATCGAGGAGACACAGCTCTTCCAGGACTTCGAGCCTGTCCAGACCCTGCTGCTGTCCTCCAAGAAGGGCAGAAGGTTTGTCTATGCCGGTTCCAACTCAGGCGTGGTGCAGGCCCCCGTGGCCTTCTGCGGAAAACACGGCACCTGCGAGGACTGCGTGCTGGCCCGGGACCCCTACTGCGCCTGGAGCCCGGCCGCAGCCGCCTGTATCGCCCTGCACCAGACCGACGGCCCCAGCAGGTACCGGCCCCACTGCATGCAGGCGCTCCTCCCAGCCCCATGGTGTCAAGCGCATGCACTGTGTAACCTGTGCCCGGTTGTCTTGCAGGGGTTTGATTCAGGAGATGAGCGGGGATGTGTCCGCTTGCCCCGAACAGGATATAAAATTAAAGAAAGTTACCTGCAGCATTTTTTCAAGCATGGTGGCACAGCAGAACTCAAGTGCTCCCAAAAGTCCAACCTGGCCCGGGTGGTGTGGAAGTTCCAGAACGGCGTGCTCAAGGCCGAAAGCCCCAAGTACAGCCTGGTGGGCAGGAAGAACTTGCTCATCTTCAACCTGTCAGAAGGAGACAGTGGGGTGTACCAGTGCCTGTCTGAGGAGAGGGTCAAGAACAAGACAGTCCTGCAGGTGGTGGCCAAGCACGTTCTGGAGGTCAAGGTGGTCCCTCGAACTCCGGTGGTCTCCACCTCGCCGGTCACACGGACAGAAGGTAGTAGGATCACCTCCAAAGTGTCAGCGGGGCCCACCCGAGGCTCCTTTCCCCAGACCCCGGCCGTGCAGGCCACCACGCCCAGTGCCATCGCCCCGCCGTCCAGCCCCGAGGGGCCCACCGGCACGTCCTGTGAACCAAAGATTGTCATCAACACGGTCCCCGAGGTCCACTCGGAGAAGACGATGTATCTCAAGTACAGTGACAACCGTCTCCTCATGTTTCTCTTCCTCTTCTTCTTCGCCCTCTTCCTCTGCCTCTTCACCTATAACTGCTATAAGGCCTACCTGCCTGGACAGTGCTTAAAGTTCCGCTCGGCCATGCTCCTGGGGAAGAAGCAGCCCACGTCGGACTTCTCAGACTGCGAGCAGAGCATGAAGGAGACGCTGGTGGAGCAGGGCAGCTTCTCCCAGCAGAACGGCGGGCAGCCCAAGCCGGCCCTGGACACCGGCTATGAGACAGAGCAGGACACCGTGGCCAGCAGGCTGCCCACCGACCGGGAGGACTCGCAGAAGATCGACGAGCTCCCGGTCCGGGACCGGCCATTCGACGTCAAGTGCGAGCTGAAGTTCGCCGACTCGGACGCGGACGGGGACTGA

Related Sequences

bmy_07976T0 SequenceType object (3)

Length: 906 aa      View alignments
>bmy_07976T0
MRMCAPVGGLLTALAVVFGTAVAFAPIPRITWEHREVQLVQFHEPGIFNYSALLLSEDKDTLYVGAREAVFALNAHNISKKQHEAYWKVSEDKKAKCAEKGKSKQTECLNYIRVLQPLSASALYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAQSYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIGESPEGGDGEDDKVYFFFTEVSVEYEFIFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSNLVFNVLRDVFVLRSPSLKEPMFYGVFTPQLNNVGLSAVCAYNLSTAEAVFSRGKYMQSATVEQSHTKWVRYNGAVPTPRPGACINREARAANFSSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKSDVNYTQIVVDRTRALDGTVHDVMFVSTGGSRALGKNMDRGALHKAISLENDVHIIEETQLFQDFEPVQTLLLSSKKGRRFVYAGSNSGVVQAPVAFCGKHGTCEDCVLARDPYCAWSPAAAACIALHQTDGPSRYRPHCMQALLPAPWCQAHALCNLCPVVLQGFDSGDERGCVRLPRTGYKIKESYLQHFFKHGGTAELKCSQKSNLARVVWKFQNGVLKAESPKYSLVGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVLQVVAKHVLEVKVVPRTPVVSTSPVTRTEGSRITSKVSAGPTRGSFPQTPAVQATTPSAIAPPSSPEGPTGTSCEPKIVINTVPEVHSEKTMYLKYSDNRLLMFLFLFFFALFLCLFTYNCYKAYLPGQCLKFRSAMLLGKKQPTSDFSDCEQSMKETLVEQGSFSQQNGGQPKPALDTGYETEQDTVASRLPTDREDSQKIDELPVRDRPFDVKCELKFADSDADGD*