Part of scaffold_342 (Scaffold)

For more information consult the page for scaffold_342 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PPFIBP1 ENSTTRG00000012356 (Bottlenosed dolphin)

Gene Details

PTPRF interacting protein, binding protein 1 (liprin beta 1)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011746, Bottlenosed dolphin)

Protein Percentage 84.79%
cDNA percentage 85.14%
Ka/Ks Ratio 0.32579 (Ka = 0.0214, Ks = 0.0658)

PPFIBP1 ENSBTAG00000004283 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005615, Cow)

Protein Percentage 93.85%
cDNA percentage 92.21%
Ka/Ks Ratio 0.1412 (Ka = 0.0322, Ks = 0.228)

PPFIBP1  (Minke Whale)

Gene Details

PTPRF interacting protein, binding protein 1 (liprin beta 1)

External Links

Gene match (Identifier: BACU006113, Minke Whale)

Protein Percentage 80.9%
cDNA percentage 83.78%
Ka/Ks Ratio 0.61336 (Ka = 0.1623, Ks = 0.2646)

Genome Location

Sequence Coding sequence

Length: 1806 bp    Location:2344..23166   Strand:+
>bmy_08041
CAGTTCCACACCAGCGTCTTGCAAGTTTCAATCTCTTCRTTATTGCCAGCATCTAAAGGCTTGGAAACTTCTGAAAAAGTGAAATTGCCTCCTAAGCCAGAGACTTCATTTGAGGAGAATGATGGAAAACTAATCCTTGGTTCTGCTGTTGAAACTCAACTGTGCGATAGTCTTTCCTTAGGAATAGATGAAAAGGAGTCTATTCCGAAGCCTTCAGAGGCTAAAGCTCTGGTAGAAAGCAGCCCATTTGGGAGCCTCCCTCACAAAGCTCCGGGACACGATGCCTCTGTGGATGACAATCCCTTTGGCACTCGAAAAACCAGATCTTCCTTYGGTCGTGGCTTTTTTAAAATCAAAAGTAACAAGAGGACAGCAAGTGCGCCAAACTTGGAAATGACGGTGAATGACTTGGGGGAAAAGTTAGCAAAAAATGCTTCCATGGGCTTAATTCAGAGTTTGTATTCTGTTCTTGGAATAGCTGAAACAGAGAAGGAGACACCCGAGCACTTAGATCTGGCTGGTGTATCGTCTCAGCCAAAAGATTCACAGGGGAGCAGTCCCTTCCAGATATCGCCACCATCGCCGGATTCCAAAAAGAAATCTAGGGGTATCATGAGACTCTTTGGAAAACTTAGGAGAAGTCAATCAACTACATTTAACCCAGATGACATGTCTGAGCCTGAATTCAAAAGAGGAGGGACAAGGGCAACTGCAGGACCCCGATTGGGTTGGTCTCGAGATTTGGGACAATCTAACAGTGACTTGGATATGCCATTTGCCAAGTGGACCAAGGAACAGGTTTGCAATTGGCTTGTGGAACAGGGCTTGGGGTCCTACCTGAACTCTGGCAAGCGCTGGATTGCATCTGGCCAAACACTTTTGCAGGCTTCTCAACAAGATCTAGAGAAGGAACTTGGAATCAAGCATTCACTTCATCGAAAGAAACTCCAACTGGCACTGCAAGCCCTGGGATCCGAAGAAGAAACCAATCATGGAAAGCTGGATTTCAACTGGTACAAGACCCAGTTTGATGAAGGACGGGTAGATGGTCGAATGCTTCATTACATGACTGTTGATGACTTACTGTCTTTGAAGGTCATGAGCGTGCTCCATCATCTCAGTATCAAGAGGGCCATCCAGGTCCTGAGGATCAATAACTTTGAACCAAACTGTCTGCGGAGGCGACCCTCTGACGAGAATAGCATCACCCCATCAGAGGTTCAGCAGTGGACCAATCATCGCGTGATGGAGTGGCTGCGCTCCGTGGACTTGGCGGAATATGCCCCCAATCTCAGAGGCAGTGGTGTCCATGGTGGGCTCATGTTATTGAACATCCCACCAAGCAAGACCCTGCTGCGAAGACATTTGGCCACTCATTTCAACCTTCTGATCGGTACTGAGGCCCAACACCAGAAACGGGATGCCATGGAGTTACCAGATTATGTACTTTTAACAGCTACTGCCAAAGTGAAGCCAAAGAAACTTACCTTCAGCAATTTTGGGAATCTGAGAAAGAAAAAACAGGAAGATGGGGAGGAATATATTTGTCCAATGGAATTGGGACAGGCCTCGGGAGGTACATCTAAGAAAGGATTTAAGCCTGGTTTGGACATGCACCTGTATGATGAGGACGACTTGGACCGGTTAGAGCAGATGGAAGACTCAGAAGGGACAGTGAGACAGATAGGTGCATTCTCTGAGGGCATCAACAATCTAACCCACATGTTAAAGGAAGACGACATGTTTAGAGATTTTGCTGCCCGTTCCCCCAGCGCCAGCATCACCGATGAAGACTCAAATGTCTGA

Related Sequences

bmy_08041T0 Protein

Length: 602 aa      View alignments
>bmy_08041T0
QFHTSVLQVSISSLLPASKGLETSEKVKLPPKPETSFEENDGKLILGSAVETQLCDSLSLGIDEKESIPKPSEAKALVESSPFGSLPHKAPGHDASVDDNPFGTRKTRSSFGRGFFKIKSNKRTASAPNLEMTVNDLGEKLAKNASMGLIQSLYSVLGIAETEKETPEHLDLAGVSSQPKDSQGSSPFQISPPSPDSKKKSRGIMRLFGKLRRSQSTTFNPDDMSEPEFKRGGTRATAGPRLGWSRDLGQSNSDLDMPFAKWTKEQVCNWLVEQGLGSYLNSGKRWIASGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNHGKLDFNWYKTQFDEGRVDGRMLHYMTVDDLLSLKVMSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENSITPSEVQQWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMLLNIPPSKTLLRRHLATHFNLLIGTEAQHQKRDAMELPDYVLLTATAKVKPKKLTFSNFGNLRKKKQEDGEEYICPMELGQASGGTSKKGFKPGLDMHLYDEDDLDRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFRDFAARSPSASITDEDSNV*