Part of scaffold_340 (Scaffold)

For more information consult the page for scaffold_340 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ZC3HC1 ENSTTRG00000008458 (Bottlenosed dolphin)

Gene Details

zinc finger, C3HC-type containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008018, Bottlenosed dolphin)

Protein Percentage 95.57%
cDNA percentage 96.6%
Ka/Ks Ratio 0.35113 (Ka = 0.0229, Ks = 0.0651)

ZC3HC1 ENSBTAG00000011247 (Cow)

Gene Details

nuclear-interacting partner of ALK

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014941, Cow)

Protein Percentage 90.72%
cDNA percentage 91.49%
Ka/Ks Ratio 0.24435 (Ka = 0.05, Ks = 0.2044)

ZC3HC1  (Minke Whale)

Gene Details

zinc finger, C3HC-type containing 1

External Links

Gene match (Identifier: BACU006803, Minke Whale)

Protein Percentage 95.6%
cDNA percentage 96.3%
Ka/Ks Ratio 0.60611 (Ka = 0.032, Ks = 0.0528)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1434 bp    Location:442099..459955   Strand:+
>bmy_08072
ATGGCGGCGCCCAGTGAGGGGCTAGCGTTTGCTGCGGGGGTCGAAAAGAATTGTAGTGCGGTTGTTCGCTCCCCAGAAGGGACTCCCCAGAAAGTCCGGCAGCTGATAGACGAGGGGATTGCCCCGGAAGAGGGAGGCGCCGAAGCGAAGGACACATCTGCCACATTCCAGTCAGTTAATGGGTCACCCCGAGCAGAAGAGCCTCCATTGGAATCTACAAGCAAAGAAGCCTTCTTTAGCAGAGTGGAAACCTTTTCTATATCCTTTTTGGTTCGAGTGAGTAAGCCCCCTGAGCTGTCTCCACTGGTCTGTGCAAAATATGGCTGGGTCACAGTTGAATGTGATATGCTGAAGTGCTCCAGCTGTCAAGCTTTTCTCTGTGCCACTTTACAACCAGCTTTTGATTTTGACAGATATCGATTTGGGATGTTGCCATTGGATGAACCTGCGGTTCTTGTTAGTGAATTCGTAGATCGTTTTCAAAGTCTTTGTCACTTGGACTTCCAGCTTCCTTCCCTGAGGCCAGAGGACTTAAAAACTATGTGCTTGACAGAAGACAAGATCAGTCTTCTCCTGAACCTACTTGAAGATGAACTTGATCACCGAACTGATGAGAGAAAAACTGCAACCAAACTAGGTTCAGACATCATCCAAATCCACGTCACTTCCTGTATTCTCTCCCTGTGTGGCTGGGCGTGTAGTTCTTCGTTGGAACCCATGCAGCTCTCCCTGATAACATGTTCACAGTGTATGAGGAAGGTGGGGCTCTGGGGCTTCCAGCAGATCGAGTCATCCATGACCGACCTGGATGCCTCCTTTGGTCTGACCAGCTCCCCCATCCCAGGCTCTGAGTGCCGGCCAGAGCGCTTCTCTSTGGTGCCTGAGTCTCCTCGGAGGATGATGACTCGGAGCCAGGATGCCACGTTTTCCCCAGGCTCAGAGCAGGCTGAAAGGAGCCCAGGTCCCATTGTCTCTAGAACTCGAAGCTGGGACTCTTCCAGTCCTGTCGACCGTCCTGAGCCAGAGGCCGCTAGCCCCACCACCAGAACCCGCCCAGTGACCCGAAGCATGGGAACAGGAGACACCACTGGCCTGGAAGTGCCATCTAGTCCTCTTCGGAGAGCCAAACGGGCTCGCCTCTGCTCTTCCGGCAGCTCGGACACATCTTCCCGAAGCTTCTTTGATCCCACTTCTCAGCATCGAGACTGGTGTCCTTGGGTGAATATCACATTTGGAAAAGAAACCAGGGAGAATGGTGGAACTGAGGTAGATGCCAGCACCCCGGCAGAGCCAGGCTGGAAGGCAGTGCTGAACATCCTCTTGGCCCACAAAGAGTCTAACCAGCCAGCTGAAACCGACTCCATGAGTCTCTCTGAGAAATCAAGGAAGGTATTCCGAATATTCCGGCAGTGGGAATCTTTATGCTCATCCTGA

Related Sequences

bmy_08072T0 Protein

Length: 478 aa      View alignments
>bmy_08072T0
MAAPSEGLAFAAGVEKNCSAVVRSPEGTPQKVRQLIDEGIAPEEGGAEAKDTSATFQSVNGSPRAEEPPLESTSKEAFFSRVETFSISFLVRVSKPPELSPLVCAKYGWVTVECDMLKCSSCQAFLCATLQPAFDFDRYRFGMLPLDEPAVLVSEFVDRFQSLCHLDFQLPSLRPEDLKTMCLTEDKISLLLNLLEDELDHRTDERKTATKLGSDIIQIHVTSCILSLCGWACSSSLEPMQLSLITCSQCMRKVGLWGFQQIESSMTDLDASFGLTSSPIPGSECRPERFSXVPESPRRMMTRSQDATFSPGSEQAERSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVTRSMGTGDTTGLEVPSSPLRRAKRARLCSSGSSDTSSRSFFDPTSQHRDWCPWVNITFGKETRENGGTEVDASTPAEPGWKAVLNILLAHKESNQPAETDSMSLSEKSRKVFRIFRQWESLCSS*