Part of scaffold_340 (Scaffold)

For more information consult the page for scaffold_340 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IRF5 ENSBTAG00000004989 (Cow)

Gene Details

interferon regulatory factor 5

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006567, Cow)

Protein Percentage 91.95%
cDNA percentage 92.49%
Ka/Ks Ratio 0.15176 (Ka = 0.0376, Ks = 0.248)

IRF5  (Minke Whale)

Gene Details

interferon regulatory factor 5

External Links

Gene match (Identifier: BACU006811, Minke Whale)

Protein Percentage 97.47%
cDNA percentage 98.38%
Ka/Ks Ratio 0.37817 (Ka = 0.0118, Ks = 0.0312)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1590 bp    Location:1309692..1301621   Strand:-
>bmy_08083
ATGGCACTCTGGAGAGGGGCATACGCCTTTGCCATGAACCAGCCTGCCCCCGCTGCCCTTCCTCCGCCCCGCCGCGTACGGCTGAAGCCCTGGCTGGTGGCCCAGGTGAACAGCTGCCAGTACCCGGGGCTTCAGTGGGTCAATGGCGAAAAGAAATGCTTCTATATCCCCTGGCGCCATGCCACGCGGCACGGCCCCAGCCAGGATGGAGATAACACCATCTTCAAGGCCTGGGCCAAGGAGACGGGAAAGTACACCGAGGGGGTGGACGAGGCTGATCCGGCCAAGTGGAAGGCCAACCTGCGCTGTGCCCTTAACAAGAGCCGTGACTTTCGCCTCATCTATGATGGGCCCCGGGACATGCCGCCTCAGCCCTACAAGATCTACGAGGTCTGCTCCAATGGCCCCACTCCTGCAGAGTCACAGCCCAGTGAGGATTACGCTCTCGGTGCAGGAGAGGAGGAGGAGGAGGAAGAGGAAGAGCTCCAGAGGATGTTACCAAGCCTGAGCCTCACAGAAGCAGTGCAGCCTGGCCCCCCCATAGCACCCTATTCTTTACCCAAAGAGRATGTCAAGTGGCCACCCACTCTCCAGCCGCCTGTGGTGCTGGGTGCCCCTGCTCCAGACCCCAGCCTCCTGGGCCCTGCCCCTGGCAACCCTGCTGACTTTGGGGAGCTGCTTTCTGAAGTCCTGCCGAGCCCACAGCCTGGGACCCTGGCTGCCAGCCTGCCCCCAACAGGCGAACAACTCCTGCCCGACCTGCTGATCAGCCCTCACATGCTGCCTCGTAAGGACCCCGGGGGGCTGCGCAGGGAAAAGCAGCGCTGGGAAGTGACCGACCTGGAGATCAAGTTTCAGTACCGGGGGAGGCCACCCCGGGCCCTCACCATCAGCAACCCCCATGGCTGCCGGCTCTTCTACAGCCAGCTGGAGGCCACGCAGGAGCAGGTGGAGCTCTTTGGCCCTGTGAGCCTAGAACAAGTGCGCTTCCCCAGCCCCGAGGACATCCCCAGCGACAAGCAGCGCTTTTATACCAACCAGCTGCTGGATGTCCTGGACCGCGGGCTCATCCTCCAGCTACAAGGCCAGGATCTGTATGCCATCCGCCTGTGCCAGTGCAAGGTGTTCTGGAGCGGGCCCTGCGCCTCAGCCCATGGCTTACACCCCAACCCCATCCAGCGGGAGGTCAAGACCAAGCTCTTCAGCCTGGAGCATTTTCTCAATGAGCTCATCCTGTTCCAGAAGGGCCAGACCAACACCCCACCACCGTTTGAGATCTTCTTCTGCTTTGGGGAGGAGTGGCCTGATCGCAAACCCCGAGAGAAGAAGCTCATCACTGTACAGGTGGTGCCTGTAGCAGCTCGGCTGCTGCTGGAGATGTTCTCAGGGGAGCTTTCTTGGTCGGCTGATAGCATCCGGCTACAGATCTCAAACCCAGACCTCAAAGACCGCATGGTAGAACAGTTCAAGGAGCTCCATCACATCTGGCAGTCCCAGCAGCAGCTGCAGCCTGTGGCCCAAGCCCCTCCTGTGGCAGGCCTCAGTGCTGGCCAGGGGCCCTGGCCCATGCACCCAGTTGGCATGCAGTAA

Related Sequences

bmy_08083T0 Protein

Length: 530 aa      View alignments
>bmy_08083T0
MALWRGAYAFAMNQPAPAALPPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKCFYIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPTPAESQPSEDYALGAGEEEEEEEEELQRMLPSLSLTEAVQPGPPIAPYSLPKEBVKWPPTLQPPVVLGAPAPDPSLLGPAPGNPADFGELLSEVLPSPQPGTLAASLPPTGEQLLPDLLISPHMLPRKDPGGLRREKQRWEVTDLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPVSLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHGLHPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFSGELSWSADSIRLQISNPDLKDRMVEQFKELHHIWQSQQQLQPVAQAPPVAGLSAGQGPWPMHPVGMQ*