Sequence details bmy_08308 (Coding sequence)

Part of scaffold_370 (Scaffold)

For more information consult the page for scaffold_370 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PMCH ENSTTRG00000017226 (Bottlenosed dolphin)

Gene Details

pro-melanin-concentrating hormone

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016327, Bottlenosed dolphin)

Protein Percentage 96.69%
cDNA percentage 97.13%
Ka/Ks Ratio 0.19955 (Ka = 0.0167, Ks = 0.0839)

PMCH ENSBTAG00000013008 (Cow)

Gene Details

pro-MCH precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017294, Cow)

Protein Percentage 92.72%
cDNA percentage 94.48%
Ka/Ks Ratio 0.24888 (Ka = 0.036, Ks = 0.1447)

PMCH  (Minke Whale)

Gene Details

pro-melanin-concentrating hormone

External Links

Gene match (Identifier: BACU000926, Minke Whale)

Protein Percentage 98.68%
cDNA percentage 99.34%
Ka/Ks Ratio 0.39857 (Ka = 0.0031, Ks = 0.0079)

Additional orthologs identified in other species via the OPTIC pipeline.

PMCH (Human)   Pmch (Mouse)  

Genome Location

Sequence Coding sequence

Length: 456 bp    Location:442830..443626   Strand:+
Raw sequence 
>bmy_08308
ATGGCAAAAMTGAGTTTCTCCTCCTACATATTAATACTAACTTTTTCTTTGCTTTCTCAAGGTGTTTCGCCTTCAGCCTCCAAGTCAATAAGAAATTTAGAAGATGACATGGTATTTAAAACGCTGAGGCTGGGGAAAGCCTTTCAGAAGGAAGATACTGAAGAAAAATCAATTGTTGTTCCTTCCCTGGAGGAATATAAAAATGATGAGAGCAATTTCATGAATGATGAGGAAAACAAAAATTCAAAGAATGCAGGTTCCAAACACAATTTCTTAAATCATGGTCTGCCACTGAATCTGGCTATAAAACCTTATCTTGCACTAAAAGGATCTGTAGCTTTTCCAGCTGAGAATGAAGTTCAAAATACTGAATCAATACAAGAAAAGAGAGAAATTGCGGATGAAGAAAACTCAGCTAAATTTCCTATAGGAAGGAGAGATTTTGACAGTGAGTAG

Related Sequences

bmy_08308T0 Protein

Length: 152 aa      View alignments
>bmy_08308T0
MAKXSFSSYILILTFSLLSQGVSPSASKSIRNLEDDMVFKTLRLGKAFQKEDTEEKSIVVPSLEEYKNDESNFMNDEENKNSKNAGSKHNFLNHGLPLNLAIKPYLALKGSVAFPAENEVQNTESIQEKREIADEENSAKFPIGRRDFDSE*