Part of scaffold_369 (Scaffold)

For more information consult the page for scaffold_369 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IRF1 ENSTTRG00000002597 (Bottlenosed dolphin)

Gene Details

interferon regulatory factor 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002435, Bottlenosed dolphin)

Protein Percentage 95.27%
cDNA percentage 95.16%
Ka/Ks Ratio 0.07819 (Ka = 0.0043, Ks = 0.0553)

IRF1 ENSBTAG00000031231 (Cow)

Gene Details

Interferon regulatory factor 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000041732, Cow)

Protein Percentage 94.08%
cDNA percentage 94.5%
Ka/Ks Ratio 0.19307 (Ka = 0.0308, Ks = 0.1596)

IRF1  (Minke Whale)

Gene Details

interferon regulatory factor 1

External Links

Gene match (Identifier: BACU018642, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.58%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0185)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 966 bp    Location:1196230..1189125   Strand:-
>bmy_08348
ATGCCCATCACTCGGATGCGCATGAGACCCTGGCTAGAGATGCAGATTAATTCCAACCAAATCCCAGGGCTGATCTGGATTAATAAAGAGGAGATGATCTTCCAGATCCCATGGAAGCACGCTGCCAAGCATGGCTGGGACATCAACAAGGATGCCTGTCTGTTTCGGAGCTGGGCCATTCACACAGGCCGATACAAAGCAGGGGAAAAGGAGCCGGATCCCAAGACATGGAAAGCCAACTTTCGCTGTGCCATGAACTCCCTGCCAGATATCGAGGAGGTGAAGGACCAGAGCAGGAACAAGGGCAGTTCAGCTGTGCGGGTGTACCGGATGCTCCCACCCCTCACCAAGAATCAGAGGAAAGAGAGAAAGTCCAAGTCCAGCAGAGATGCTAAGAGCAAGGCCAAGAAGTCATTTGGGGAATCCAGCCCCGATACCTTCTCTGATGGACTCAGCAGCTCCACCCTGCCTGATGACCACAGCAGCTACACAACTCAGGGCTACATGGGGCAGGACTTGGACGTTGAACGGGCCCTTACTCCAGCACTGTCACCGTGTGCCGTCAGTAGCACTCTCCCCGACTGGCGCATTCCAGTGGAAATTGTGCCAGACAGCACCAGTGACCTGTACAACTTTCAGGTGTCGCCCATGCCCTCCACCTCTGAAGCTGCAACAGATGAGGACGAGGAAGGGAAATTAACTGAGGACATCATGAAGCTCTTGGAGCAGTCAGGGTGGCAGCAGACAAGCGTGGATGGGAAGGGGTACCTGCTCAATGAACCTGGGGCCCAGCCCACCTCTGTCTATGGAGACTTCAGCTGCAAGGAGGAGCCAGAAGTTGACAGCCCTGGGGGGTATATTGGGCTGATATCTTCAGATCTGAAGAACATGGACACCAGCTGGCTGGACAGCCTGCTGCCCCCAGTCAGGCTGCCCTCCATCCAGGCCATTCCTTGTGCACCATAG

Related Sequences

bmy_08348T0 Protein

Length: 322 aa      View alignments
>bmy_08348T0
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKKSFGESSPDTFSDGLSSSTLPDDHSSYTTQGYMGQDLDVERALTPALSPCAVSSTLPDWRIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLTEDIMKLLEQSGWQQTSVDGKGYLLNEPGAQPTSVYGDFSCKEEPEVDSPGGYIGLISSDLKNMDTSWLDSLLPPVRLPSIQAIPCAP*