Sequence detailsbmy_08461 (Coding sequence)

Part of scaffold_387 (SequenceType object (1))

For more information consult the page for scaffold_387 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HMGB1ENSBTAG00000018103 (Cow)

Gene Details

High mobility group protein B1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000024094, Cow)

Protein Percentage 99.43%
cDNA percentage 97.14%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.0944)

HMGB1 (Minke Whale)

Gene Details

high mobility group box 1

External Links

Gene match (Identifier: BACU000112, Minke Whale)

Protein Percentage 90.29%
cDNA percentage 91.81%
Ka/Ks Ratio 0.35231 (Ka = 0.0666, Ks = 0.1891)

Genome Location

Sequence SequenceType object (2)

Length: 525 bp    Location:871209..868925   Strand:-
Raw sequence 
>bmy_08461
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCRGGAGGAGCACAAGAAGAAGCATCCAGATGCTTCCGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAGAAAGGAAAGTTTGAAGACATGGCAAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACTTATATCCCTCCTAAAGGGGAAACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTCTGAGTATCGTCCAAAAATCAAAGGAGAACATCCTGGCCTATCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGAATAACACTGCTGCAGATGACAAGCAGCCTTATGAGAAGAAGGCTGCTAAGCTGAAGGAAAAGTACGAAAAGGATATTGCTGCATACCGAGCTAAAGGGAAGCCTGATGCAGCAAAAAAGGGAGTC

Related Sequences

bmy_08461T0 SequenceType object (3)

Length: 175 aa      View alignments
>bmy_08461T0
MGKGDPKKPRGKMSSYAFFVQTCXEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGV