Sequence detailsbmy_08478 (Coding sequence)

Part of scaffold_373 (SequenceType object (1))

For more information consult the page for scaffold_373 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NPAS3ENSTTRG00000003266 (Bottlenosed dolphin)

Gene Details

neuronal PAS domain protein 3

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000003062, Bottlenosed dolphin)

Protein Percentage 97.53%
cDNA percentage 97.69%
Ka/Ks Ratio 0.1457 (Ka = 0.0126, Ks = 0.0866)

NPAS3ENSBTAG00000004462 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000005853, Cow)

Protein Percentage 97.35%
cDNA percentage 95.12%
Ka/Ks Ratio 0.04137 (Ka = 0.0125, Ks = 0.3033)

Additional orthologs identified in other species via the OPTIC pipeline.

NPAS3 (Human)   Npas3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2073 bp    Location:320227..293097   Strand:-
Raw sequence 
>bmy_08478
ATGGTGCAAGGCTTCCTGACCCTACTGTGGTGTGTGATTCACATAACGGGCCGGCTACGACTGAGGGTGTCGCTGTCCCACGGGAGGACCGTCCCCAGCCAAATCATGGGTCTCGTGGTTGTGGCTCATGCCTTGCCTCCCCCTACGATCAATGAAGTCAGAATTGACTGCCATATGTTCGTCACTCGAGTAAATATGGACCTCAATATCATTTACTGTGAAAATAGGATTAGTGATTATATGGATCTGACTCCCGTAGACATTGTAGGGAAAAGATGCTACCACTTCATCCATGCTGAAGACGTCGAGGGCATCAGGCACAGTCACTTGGACTCCACCTCACTGGAGTCACTGAACCCAATTTCATTGATTCTTCAGGCCAAATTGAGCAAATCAACATTTCAAGCTGATGGTGATGGGCCCCTGGATCTGCTCTGTGGTGTGGACCACGTGCTGAATAAGGGCCAGTGTGTGACAAAGTACTATCGTTGGATGCAGAAGAATGGAGGATATATTTGGATACAGTCTAGTGCCACAATAGCTATTAACGCCAAGAACGCAAATGAGAAGAACATCATCTGGGTGAATTATCTTCTGAGCAACCCCGAGTACAAGGACACGCCAATGGACATTGCACAGCTTCCCCACCTGCCGGAGAAAACTTCGGAATCCTCAGAGACCTCCGACTCTGAGTCAGACTCTAAAGACACCTCAGAGGACAACGAGAACTCCAAGTCCGACGAGAAGGGGAACCAGTCCGAGAACAGCGAAGACCCGGAGCCCGACCGCAAGAAGTCGGGCAACACGTGCGACAACGACATGAACTGCAATGACGACGGCCACAGCTCCAGCAACCCGGACAGCCGCGACAGCGACGACAGCTTCGAGCACTCGGACTTTGAGAACCCCAAGGCGGCCGAGGACGGCGGCGGCTTCGGCGCGCTGGGCCCCATGCAGATCAAGGTCGAGCGCTACGTGGAGAGCGAGTCGGACCTGCGGCTGCAGAACTGCGAGTCGCTGTCGTCGGACAGCGCCAAGGACTCGGACAGCGCGGGCGAGGCGGGCGCGCAGGCCTCCAGCAAGCACCAGAAGCGCAAGAAGAGGCGGAAACGGCAGAAGGGCGGCAGCGCCAGCCGCCGGCGCCTGTCCAGCGCGTCGAGCCCCGGCGGCCTGGACGCGGGCCTGGTGGAGCCCCCGCGGCTGCTGTCCTCCCCCAACAGTGCCTCGGTGCTCAAGATCAAGACGGAGATCTCGGAACCCATCAACTTCGACAACGACAGCAGCATCTGGAACTACCCGCCCAACCGGGAGATCTCCCGGAACGAGTCGCCCTACAGCATGACCAAGCCCCCCAGCTCCGAGCACTTCCCGTCCCCGCCGGGCGGCGCAGGCGGCGGGGGGCTGCACGTGGCCATCCCCGACTCTGTCCTCACTCCGCCTGGTGCCGACGGCACGGCCGCCGCCGCCGCCCGCAAGACTCAGTTCGGCACCTCGGCCCCCGCGGCCTTGGCCCCCGTCGCCTCCGACCCGCTGTCGCCCCCGCTCTCGGCGTCCCCGCGGGACAAGCACCCCGGGGGCGGAAGCAGCGGCGGCGGGAGCGGCCCCGGAGCGTCCAACTCCTTGCTGTACACTGGGGACCTGGAGGCGCTGCAGAGGTTGCAGGCGGGCAACGTCGTGCTGCCGCTGGTGCACAGGGTGACCGGGACCCTGGCGGCCACCAGCACGGCCGCGCAGAGGGTCTACACCACGGGCACCATCCGCTACGCGCCCGCCGAGGTGACCCTGGCCATGCAGGGCAACCTGCTGCCCAACGCGCACGCTGTTAACTTCGTGGACGTTAACAGCCCGGGCTTCGGCCTTGACCCCAAGACGCCCATGGAGATGCTCTACCACCACGTGCACCGGCTCAACATGTCGGGACCGTTTGGCGGCGCCGTGAGCGCGGCCAGCCTGACGCAGATGCCCGCCGGCAACGTGTTCACTACGGCCGAGGGACTCTTCTCCACGCTGCCCTTCCCCGTCTACAGCAACGGCATCCACGCGGCACAGACTCTGGAGCGCAAGGAGGACTGA

Related Sequences

bmy_08478T0 SequenceType object (3)

Length: 691 aa      View alignments
>bmy_08478T0
MVQGFLTLLWCVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDSTSLESLNPISLILQAKLSKSTFQADGDGPLDLLCGVDHVLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSEDNENSKSDEKGNQSENSEDPEPDRKKSGNTCDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGGGFGALGPMQIKVERYVESESDLRLQNCESLSSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPPGGAGGGGLHVAIPDSVLTPPGADGTAAAAARKTQFGTSAPAALAPVASDPLSPPLSASPRDKHPGGGSSGGGSGPGASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED*