Part of scaffold_388 (Scaffold)

For more information consult the page for scaffold_388 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP20 ENSTTRG00000006546 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 20

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006196, Bottlenosed dolphin)

Protein Percentage 98.0%
cDNA percentage 98.24%
Ka/Ks Ratio 0.10332 (Ka = 0.008, Ks = 0.0775)

USP20 ENSBTAG00000020311 (Cow)

Gene Details

Ubiquitin carboxyl-terminal hydrolase 20

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027070, Cow)

Protein Percentage 96.58%
cDNA percentage 94.07%
Ka/Ks Ratio 0.03551 (Ka = 0.0147, Ks = 0.4135)

USP20  (Minke Whale)

Gene Details

ubiquitin specific peptidase 20

External Links

Gene match (Identifier: BACU016218, Minke Whale)

Protein Percentage 97.4%
cDNA percentage 98.13%
Ka/Ks Ratio 0.27603 (Ka = 0.0139, Ks = 0.0502)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2739 bp    Location:270852..237243   Strand:-
>bmy_08581
ATGGGGGACTCCAGGGACCTTTGCCCTCATCTTGACTCTGTAGGGGAGGTGACCAAAGAGGACTTGCTGCTCAAATCCAAGGCCAAAAAGCACAACCTGACAGTGAACCTGACCACGTTCCGGGTGTGGTGCTACGCCTGTGAGAAGGAGGTGTTCCTGGAGCCTCGGCTGGCGGCCCAGCCGCCAGGCCCCTCGCCCAAGTTCTCAGAGCAGGACTCTGTGCTGCCCTCCCACCCTCTGAAAGCTGTCCCCATTGCTGTGGCTGACGAAGGAGAGTCCGAGTCAGAGGACGATGACCTCAAACCGCGAGGCCTCACGGGCATGAAGAACCTTGGCAACTCCTGCTACATGAACGCGGCCCTGCAGGCCCTGTCCAATTGCCCCCCACTGACCCAGTTCTTCTTGGAGTGTGGAGGCCTGGTGCGCACAGACAAGAAGCCAGCCCTGTGCAAAAGTTACCAGAAGCTGGTCTCTGAGGTCTGGCACAGGAAACGCCCCAGCTACGTGGTTCCCACCAGCCTGTCCCATGGGATCAAGTTGGTCAACCCGATGTTCCGAGGCTATGCCCAGCAGGACACCCAAGAGTTCCTGCGCTGCCTGATGGACCAGCTGCACGAGGAGCTCAAGGAGCCCGTGGTGGCCGCGGCGGCAGCGCTGACCGAGGCTCGGGACTCGGACTCGAGCGACACGGATGAGAAGCGGGAGGGCGACCGGAGCCCATCAGAGGACGAGTTCCTGTCCTGTGACTCCAGCAGCGACCGCGGTGAGGGCGACGGGCAGGGGCGCGGCGGGGGCGGCTCCCAGGCTGAGACGGAGCTGCTGATCGCGGACGAGGCGGGCCGCGCCATCTCCGAGAAGGAGCGCATGAAGGACCGCAAGTTCTCGTGGGGCCAGCAGCGCACCAGCTCGGAGCAGGTGGACGAGGACGCCGACGTGGACACCGCCATGGCCGCCCTGGACCAGCAGCCCACGGACACGCAGCCGCCGCCACCGCGGTCCACCAGCCCCTGCCGGACGCCAGGTACCCGCCAAGCCACTCGGGGCGTCGCAGCCCCGTTCGTCCAGCTCCTGCTGGGGGGCGGAGCACCCACAGCCTGCTCAGCTACCCCCCACGCTGGGGGGCTCTCCCACGAGACCCGACTTACCGGCCCGGGGCTGGCTCGGCTGCCCTGCCCCAGCACGGTCCCCCCTTTGCCCCCAGAGCCGGACAACGAGGCCCACATGCGCAGCGCCTCTCGCCCCTGCAGCCCTGTCCACCACCACGAGGGCCACGCCAAGCTGGCCGGCAGCCCTCCTCGTGCGAGCCCCGTGAGGATGGGGCCGTCCTACGTGCTCAAGAAAGCCCAGGTACCGGGCGCCGGCAGCCGGCGGCGGAAGGAGCAGCGCTACCGCAGCGTCATCTCAGACATCTTCGACGGCTCCATCCTCAGCCTCGTGCAGTGTCTCACCTGTGACCGGGTGTCCACCACGGTAGAGACATTCCAGGACCTGTCGCTGCCCATTCCTGGCAAGGAAGACCTGGCCAAGCTCCACTCGGCCATCTACCAGAACGTGCCGGCCAAGCCGGGTGCCTGTGGGGACAGCTCCGCCGCCCAGGGCTGGCTGGCCTTTATCGTGGAGTATATCCGACGGTTCGTGGTATCCTGTACCCCCAGCTGGTTTTGGGGGCCGGTCGTCACCCTGGAAGACTGCCTCGCTGCCTTCTTCGCCGCCGATGAGCTGAAGGGTGACAACATGTATAGCTGTGAACGGTGTAAAAAGCTGCGCAACGGCGTGAAGTACTGTAAGGTCCTGCGGTTGCCGGAGATCCTGTGCATTCACCTGAAGCGCTTTCGACACGAGGTGATGTACTCATTCAAAATCAGCAGCCACGTCTCCTTCCCCCTGGAGGGACTTGACCTGCGCCCCTTCCTCGCCAAGGAGTGCACGTCCCAGATCACCACCTACGACCTCCTCTCGGTCATCTGCCACCACGGGACGGCAGGCAGTGGCCACTACATCGCCTACTGCCAGAACGTGATCAACGGGCAGTGGTATGAGTTCGACGACCAGTACGTCACCGAGGTTCACGAGACAGTGGTGCAGAACGCCGAGGCCTACGTGCTCTTCTACAGGAAGAGCAGCGAGGAGGCCGTGCGGGAGCGGCAGCAGGTGGTGTCCCTGGCCGCCATGCGGGAGCCCAGCCTGCTGCGGTTCTACGTGTCCCGGGAATGGCTCAACAAGTTCAACACCTTCGCCGAGCCGGGGCCCATCACCAACCATACCTTCCTCTGCTCCCACGGAGGCATCCCGCCCTACAAATACCACTACATCGACGATCTGGTGGTGATCCTGCCCCAGAACGTCTGGGAGCACCTCTACAACAGGTTTGGGGGCGGCCCTGCCGTGAACCATCTGTACGTGTGCTCCATCTGCCAGGTGGAGATCGAGGCGCTGGCCAAGCGCAGGCGGATTGAGATCGACACCTTCATCAAGCTGAACAAGGCGTTCCAGGCCGAGGAGTCGCCCAGCATCATCTACTGCATCAGCATGCAGTGGTTCCGGGAGTGGGAGGCCTTCGTCAAGGGCAAGGACAACGGAGCTGACTACGGGCAGATCTCAGAGGAGACCTGGGTGTACCTGAATAACCTGTATGGCGGCGGCCCCGAGATCGCCCTCCGCCAGAGTGTGGCCCAGCTCCAGGACCCGGAGAGCTTGCACGGGGAGCAGAAAATCGAAGCCGAGACCCGGGCCGTGTGA

Related Sequences

bmy_08581T0 Protein

Length: 913 aa      View alignments
>bmy_08581T0
MGDSRDLCPHLDSVGEVTKEDLLLKSKAKKHNLTVNLTTFRVWCYACEKEVFLEPRLAAQPPGPSPKFSEQDSVLPSHPLKAVPIAVADEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLVSEVWHRKRPSYVVPTSLSHGIKLVNPMFRGYAQQDTQEFLRCLMDQLHEELKEPVVAAAAALTEARDSDSSDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGGSQAETELLIADEAGRAISEKERMKDRKFSWGQQRTSSEQVDEDADVDTAMAALDQQPTDTQPPPPRSTSPCRTPGTRQATRGVAAPFVQLLLGGGAPTACSATPHAGGLSHETRLTGPGLARLPCPSTVPPLPPEPDNEAHMRSASRPCSPVHHHEGHAKLAGSPPRASPVRMGPSYVLKKAQVPGAGSRRRKEQRYRSVISDIFDGSILSLVQCLTCDRVSTTVETFQDLSLPIPGKEDLAKLHSAIYQNVPAKPGACGDSSAAQGWLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKISSHVSFPLEGLDLRPFLAKECTSQITTYDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRKSSEEAVRERQQVVSLAAMREPSLLRFYVSREWLNKFNTFAEPGPITNHTFLCSHGGIPPYKYHYIDDLVVILPQNVWEHLYNRFGGGPAVNHLYVCSICQVEIEALAKRRRIEIDTFIKLNKAFQAEESPSIIYCISMQWFREWEAFVKGKDNGADYGQISEETWVYLNNLYGGGPEIALRQSVAQLQDPESLHGEQKIEAETRAV*