Part of scaffold_388 (Scaffold)

For more information consult the page for scaffold_388 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000011621 (Bottlenosed dolphin)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011020, Bottlenosed dolphin)

Protein Percentage 89.89%
cDNA percentage 91.04%
Ka/Ks Ratio 0.6052 (Ka = 0.0555, Ks = 0.0917)

NUP188 ENSBTAG00000010613 (Cow)

Gene Details

nucleoporin NUP188 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014030, Cow)

Protein Percentage 91.1%
cDNA percentage 89.71%
Ka/Ks Ratio 0.21301 (Ka = 0.0617, Ks = 0.2898)

NUP188  (Minke Whale)

Gene Details

nucleoporin 188kDa

External Links

Gene match (Identifier: BACU016235, Minke Whale)

Protein Percentage 93.05%
cDNA percentage 94.18%
Ka/Ks Ratio 0.55643 (Ka = 0.0516, Ks = 0.0927)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4824 bp    Location:980972..936038   Strand:-
>bmy_08599
GACCACAGACAGGCCACCTTACCATATGCGTCTGTTTCTCCGAATGAGAATCGTTTTCAGAGCAGTACTGAGGTGGCTGTGAAGCATAATCAGATTGAGGCAGAGCTGAATAAACATTGGCAGCGGCTTTTAGAAGGGCTTTCTTACTATAAACCTCCCAGTCCAAATTCAGCTGAAAAAGTGAAAGCTAATAAAGATGTAGCTTCACCACTGAAGGAACTGGGTTTAAGAATCAGCAAGTTTTTGGGTCTTGATGAAGAACAGAGTGTGCAGTTACTCCAGTGTTACCTTCAAGAGGATTACAGAGGTACTCGGGACTCACTAAAGGTGGTACTGCAAGATGAGAGGCAGAGCCAGGCCTTAATCCTGAAGATTGCAGATTATTACTATGAAGAAAGAACCTGTATTCTTCGTTGTGTCTTACACCTTCTCACTTATTTCCAAGATGAAAGACACCCCTATAGGGTTGAATATGCAGACTGTGTTGATAAATTGGAAAAGGAACTAGTTACAAAATATAGACAGCAATTTGAAGAGCTTTATAAAACTGAAGCACCAACATGGGAGACACATGGAAACCTCATGACTGAGCGCCAGGTGTCTCGCTGGTTTGTTCAGTGCCTTCGGGAGCAATCCATGCTGCTAGAAATTATTTTCCTTTATTATGCATACTTTGAGATGGCACCTACGGACCTATTGGTATTAACCAAGATGTTTAAAGAGCAAGGATTTGGTAGTAGGCAGACTAACAGGCACCTGGTAGATGAGACCATGGATCCTTTTGTGGATCGGATTGGCTACTTCAGTGCCCTTATCCTGGTGGAAGGCATGGATATTGAATCCTTGCATAAGTGTGCTTTGGATGACAGAAGAGAACTGCACCAGTTTGCCCAGGACGGGCTTATTTGTCAGGATATGGACCGTTTGATGTTGACCTTCGGGGACATTCCACATCACACTGCAGTGCTTTTGGCCTGGGCTCTCCTCCGTCACACCCTGAATCCAGAAGAGACAAGCAGTGTTGTCCGGAAGATAGGTGGCACAGCCATCCAGCTGAATGTATTTCAGTATTTGACCCGACTACTCCGCTCACTGGCCAGTGGGGGAAATAATTGTACCACTAGCACCGCGTGCATGTGTGTCTATGGACTCCTTTCTTTTGTTCTGACCTCGCTGGAGCTGCACACACTGGGCAATCAGCAGGAGCCAACCTCTGGTCTTGGGATCATTCTGGACAGTGTATGTGGAATGTTTCCCCATCTCCTCTCCCCACTCCTGCAATTGCTACAAGCCCTCGTATCAGGGAAGTCTACTGCCAAGAAGGTGTATAGTTTCTTGGATAAGATGTCTTTCTACAATGAACTTTATAAGCACAAGCCCCATGATGTGATCTCCCATGAAGATGGAACTCTCTGGCGGAGGCAAACACCCAAACTCCTTTACCCTCTTGGGGGTCAGACCAACCTTCGCATACCTCAAGGCACTGTGGGCCAAGTAATGTTGGACGATAGGGCCTACCTGGTACGCTGGGAATACTCTTATAGCAGCTGGACCCTCTTCACCTGTGAGATTGAAATGCTGCTTCATGTTGTTTCCACTGCAGATGTGATTCAGCACTGCCAGCGGGTCAGACCCATCATTGATCTGGTCCATAAGGTCATCAGTACAGACCTGTCGATAGCAGACTGTCTCCTGCCCATCACGTCCCGCATCTACATGCTGCTGCAGCGGTTAACGACCGTGATCTCCCGGCCTGTGGATGTCATTGCTTCTTGTGTCAATTGCTTGACCGTTCTGGCTGCCCGGAACCCAGCAAAGGTCTGGACTGATCTTCGTCACACAGGCTTTTTACCTTTCGTGGCCCACCACGTCTCCAACATGAGTCAGATGATTAGTGCCGAGGGGATGAATGCTGGAGGGTATGGAAACCTCTTGATGAATAGTGAACAGCCCCAGGGCGAGTATGGAGTCACTGTTGCCTTTCTACGCTTGATCACCACTCTTGTCAAGGGGCAGCTTGGTAGTACCCAGAGCCAAGGGCTGGYGCCCTGTGTCATGTTTGTGCTGAAGGAGATGCTGCCGAGTTACCACAAGTGGCGGTACAACTCCCACGGAGTAAGAGAACAGATTGGTTGCCTGATCCTGGAGCTGATTCATGCAATACTGAACCTGTGTCATGAAACAGACCCGCACAGCAGTCATACCCCCAGTCTGCAGTCTCTCTGCATCTGCAGCCTGGCCTATACGGAAGCAGGACAGACTGTGATCAATATCATGGGCATCGGCGTGGACACCATCGACATGGTGATGGCTGCTCAGCCCCGCAGTGATGGGGCAGAGAGCCAAGGGCAGGGCCAGCTGCTGATCAAGACGGTGAAACTGGCATTCTCCGTCACCAACAATGTTATTCGGCTGAAACCTCCTTCTAATGTGGTGTCCCCCCTGGAACAGGCTCTCACACAACATGGTGCCCATGGGAACAACCTTATTGCTGTTCTTGCCAAATACATCTACCACAAACACGACCCTGCTTTGCCACGTCTTGCCATCCAGCTACTGAAACGTCTGGCCACGGTGGCCCCAATGTCAGTATACGCCTGCCTGGGCAATGATGCGGCTGCCATCCGTGATGCCTTCCTGACCCGACTGCAGAGCAAGATTGAGGACATGCGCATCAAAGTCATGATTCTGGAATTCCTCACAGTTGCCGTAGAGACGCAGCCAGGCCTCATTGAACTGTTTCTGAATCTGGAGGTGAAGGATGGCAGTGATGGCTCCAAGACCCAAGTTCTGGGAGAATTTAACCAGTCCACTATTTGGAACCCTTTCTCCTCCCTCAGAAACATCCGAGGTGAGCAGTGGTGGAGGGAGGGACGTGTCGGGTCCCTGCTCTGTTCCCTTGTGGGTGGGCGGGGCAGCAGGGGAGAGGTTCTCATGATTCTCTGCTCTCCCCCTCCACAGCCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTTAAGGGCTCATTAGACCAGTCTTTAAAAGATACACTCGAGAAATTTTCCAGTGAGAAACGCTTTGCCTACTGGTCAGGGTATGTCAAGTCCTTGGCAGTTCACACGGCTGACACAGAGGGCAGCAGCTGCACCTCCCTGGTAGAGTATCAGATGCTGGTCTCCGCCTGGAGGATGTTTCTCATCATCGCCACCAGTCACGCGGAGATAATGCACCTGACCGACTCTGCAGTGCGTCGCCAGCTCTTTCTTGACGTGCTCGATGGGACCAAGGCGTTACTCCTAGTCCCCGCCTCCGTGAACTGCCTCCGCCTGGGCTCCATGACGTGCACTCTGCTGCTTGTTCTTCTCCGGCAGTGGAAGAGTGAGTTAGGTTCTGTGGATGAAATCCTCAGACCCTTGACGGAGATCCTGGAGGGAGTGCTGCAGGCAGACCAGCAACTCATGGAGAAGACCAAGGCCAAGGTGTTCTCAGCATTTATCACGGTGCTGCAGATGAAGGAGATGAGAGTGAGCGACATCCCCCAGTACTCCCAGCTGGTGCTGAACGTCTGTGAGACCCTCCAAGAAGAGGTGATTGCACTCTTCGACCAGACCCGCCACAGTCTGGCATCAGGCAGTGCCACAGAGGACAAGGACAGCATGGAAACTGACGACTGCTCCCGGCCCCGGCACAAGGACCAGCGGGATGGGCAGGTGTGTGTCCTGGGCCTGCATCTGGCCAAGGAGCTGTGTGAGGTGGACGAGGATGGCGACTCATGGCTGCAGGTGACCCGCAGGCTCCCCCTCCTGCCGAGCCTCTTCACCACCCTGGAGGTGAGCCTTCGCATGAAGCAGAACCTGCATTTCACCGAGGCCGCGCTGCACCTGCTCCTCACCCTGGCTCGCACCCAGCAGGGGGCCACAGCAGTGGCTGGAGGCGGCATCACCCAGAGCATTTGTTTGCCCCTCCTGAGTGTGTACCAGCTCAGCACCAATGGGACAGTGCAGACGCCCGGCACCTCTCGGAAGTCCCTGGACGCCCCCTCTTGGCCGGGTGTCTACCGCCTGTCCATGTCCCTGATGGAGCGACTCCTCAAAACCCTGCGCTACAACTTCCTGACCGAGGCCCTGGACTTCGTGGGGGTTCACAAGGAGCGGGCCTTACAGTGCCTCAATGCGGTGAGGACGGTGCAGAGTCTGGCGTGCCTGGAGGAGGCGGACCACACCGTGGGCTTCCTCCTGCAGCTCTCCAGCTTCAGGAGGGAGTGGCACTTCCACCTGCCTCAGCTTATGCGGGACGTCCAGGTAAACCTGGGCTACCTGTGCCAGGCCTGTACCTCCCTCCTGCACAGCCGCAAGATGCTGCAGCACTACCTGCAGAACAAAAACGGGGAGGGCATCCCCTCGGCTGTCGCCCCCCGAGCTCAGCGGCCACCCACAGCTGCCCCCTCCTGCTCCTCCTCCAAGCAGCCCACTCCTGACACAGAGGCCTCGGAGCAGCGGGCCTTGCACACCGTCCAGTACGGGCTCCTCAAGATCCTCAGCAGGACCCTGGCGGCCCTGCGCCACTTCACCCCCGACGTGTGCCAGATCCTGCTGGATCAGTCCCTGGACCTCGCTGAATACGACTTCCTGTTTGCCCTGAGCTTCACCACTCCCACCTTTGACTCCGAAGTGGCCCCCTCTTTTGGGACCCTTCTGGCCACAGTGAATGTGGCCCTAAACATGCTTGGAGAGGTAAGTTGGCCCCTCAACCCAAGTCTTCCCGGTTTTCCTAACCGTGACCTTGGGCACGTTTATCTAGCCTTCCCTTCATAR

Related Sequences

bmy_08599T0 Protein

Length: 1608 aa      View alignments
>bmy_08599T0
DHRQATLPYASVSPNENRFQSSTEVAVKHNQIEAELNKHWQRLLEGLSYYKPPSPNSAEKVKANKDVASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKVVLQDERQSQALILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYADCVDKLEKELVTKYRQQFEELYKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPTDLLVLTKMFKEQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRRELHQFAQDGLICQDMDRLMLTFGDIPHHTAVLLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYLTRLLRSLASGGNNCTTSTACMCVYGLLSFVLTSLELHTLGNQQEPTSGLGIILDSVCGMFPHLLSPLLQLLQALVSGKSTAKKVYSFLDKMSFYNELYKHKPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEIEMLLHVVSTADVIQHCQRVRPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRLTTVISRPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHHVSNMSQMISAEGMNAGGYGNLLMNSEQPQGEYGVTVAFLRLITTLVKGQLGSTQSQGLXPCVMFVLKEMLPSYHKWRYNSHGVREQIGCLILELIHAILNLCHETDPHSSHTPSLQSLCICSLAYTEAGQTVINIMGIGVDTIDMVMAAQPRSDGAESQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKTQVLGEFNQSTIWNPFSSLRNIRGEQWWREGRVGSLLCSLVGGRGSRGEVLMILCSPPPQPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLEKFSSEKRFAYWSGYVKSLAVHTADTEGSSCTSLVEYQMLVSAWRMFLIIATSHAEIMHLTDSAVRRQLFLDVLDGTKALLLVPASVNCLRLGSMTCTLLLVLLRQWKSELGSVDEILRPLTEILEGVLQADQQLMEKTKAKVFSAFITVLQMKEMRVSDIPQYSQLVLNVCETLQEEVIALFDQTRHSLASGSATEDKDSMETDDCSRPRHKDQRDGQVCVLGLHLAKELCEVDEDGDSWLQVTRRLPLLPSLFTTLEVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGGGITQSICLPLLSVYQLSTNGTVQTPGTSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHKERALQCLNAVRTVQSLACLEEADHTVGFLLQLSSFRREWHFHLPQLMRDVQVNLGYLCQACTSLLHSRKMLQHYLQNKNGEGIPSAVAPRAQRPPTAAPSCSSSKQPTPDTEASEQRALHTVQYGLLKILSRTLAALRHFTPDVCQILLDQSLDLAEYDFLFALSFTTPTFDSEVAPSFGTLLATVNVALNMLGEVSWPLNPSLPGFPNRDLGHVYLAFPS*