Part of scaffold_388 (Scaffold)

For more information consult the page for scaffold_388 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PHYHD1 ENSTTRG00000011619 (Bottlenosed dolphin)

Gene Details

phytanoyl-CoA dioxygenase domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011019, Bottlenosed dolphin)

Protein Percentage 20.0%
cDNA percentage 34.84%
Ka/Ks Ratio 0.34969 (Ka = 1.53, Ks = 4.3754)

BT.53448 ENSBTAG00000038831 (Cow)

Gene Details

phytanoyl-CoA dioxygenase domain-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000048693, Cow)

Protein Percentage 90.51%
cDNA percentage 91.77%
Ka/Ks Ratio 0.231 (Ka = 0.0512, Ks = 0.2218)

PHYHD1  (Minke Whale)

Gene Details

phytanoyl-CoA dioxygenase domain containing 1

External Links

Gene match (Identifier: BACU016237, Minke Whale)

Protein Percentage 98.1%
cDNA percentage 98.31%
Ka/Ks Ratio 0.20299 (Ka = 0.0087, Ks = 0.0431)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 477 bp    Location:997059..986817   Strand:-
>bmy_08601
ATGCCCGTGGTGGTGCAGAGCATGTATATCTTTAAGCAACCTCACTTGGGCGGCGAAGTCTCCCCTCACCAGGATGCCTCCTTCCTGTATACGGAGCCTCTGGGCCGGGTGCTGGGCGTGTGGATTGCTCTGGAAGACGCCACGCTGGAGAACGGCTGCCTCTGGTTCATCCCTGGCTCCCACACAGGTGGAGTGTCGAGAAGGATGGTCCGGGCCCCTGCTGGCTCGGCGCCTGGCACCAGCTTCCTTGGGACAGAGCCAGCCCGGGATAACAGCCTCTTTGTGCCCACACCGGTGCGGAGAGGGGCCCTCATCCTAATCCACGGAGAAGTGGTGCACAAAAGTGAGCAGAATTTCTCCGACTACTCACGCCAGGCCTATACTTTCCACCTCATGGAGGCTGCTGGCACCGTCTGGAGCCCAGATAACTGGCTCCAGCCGACAGCTGAGCTGCCCTTTACCCCACTGTACACCTAA

Related Sequences

bmy_08601T0 Protein

Length: 159 aa      View alignments
>bmy_08601T0
MPVVVQSMYIFKQPHLGGEVSPHQDASFLYTEPLGRVLGVWIALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGTEPARDNSLFVPTPVRRGALILIHGEVVHKSEQNFSDYSRQAYTFHLMEAAGTVWSPDNWLQPTAELPFTPLYT*