Part of scaffold_383 (Scaffold)

For more information consult the page for scaffold_383 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUP88 ENSTTRG00000014740 (Bottlenosed dolphin)

Gene Details

nucleoporin 88kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013979, Bottlenosed dolphin)

Protein Percentage 95.42%
cDNA percentage 96.46%
Ka/Ks Ratio 0.39926 (Ka = 0.0262, Ks = 0.0656)

NUP88 ENSBTAG00000011507 (Cow)

Gene Details

nuclear pore complex protein Nup88

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001625, Cow)

Protein Percentage 92.56%
cDNA percentage 92.56%
Ka/Ks Ratio 0.22299 (Ka = 0.0428, Ks = 0.192)

NUP88  (Minke Whale)

Gene Details

nucleoporin 88kDa

External Links

Gene match (Identifier: BACU020238, Minke Whale)

Protein Percentage 97.08%
cDNA percentage 97.26%
Ka/Ks Ratio 0.3664 (Ka = 0.0191, Ks = 0.0522)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1659 bp    Location:689649..719044   Strand:+
>bmy_08629
ATGGCGGTCGCCGAAGGAGCCGCGGGGGACTGTGAGCTGTGGCAGGCCTGGCTCCCTGACCATGCCGTGTTCTTGCGGCTCCAGGAAGGACGGAAAAACCAGAGCCCAGCCGCAGCCGAGAAGCCGGCTTCTTCATCATTGCCTTTGCCGCCGCCCCTGCCGCCGCAGTTGCTGACGAGAAACCTGGTCTTGGGCCTCGGCGGAGAGCTCTTCTTATGGGACGGAGAAGGCAGCTGCTTCTTAGTCGTGCGCCTTCTGGACCCCAGCGGCGCCGGTGAGGAGTCCCCCCTCTCCCAGTACCAGGTCACAAGCCCACAAACTACTGACTGTAAAATTTCAGTTTATAAGAGAGAGACAGCAGTTGCATTTGACTTTGGGCCGTTGTCGGCAGTCCCGAAGAACATATTTGGACAAAAAGGCAAAGATGAAGTGTTGGCTTACCCCCTGTACATCTTATATGAGAATGGGGAGACTTTCCTTACATATGTTAGTCTGTTGCACAGCCCTGGGAGTGTGGGAAAGCTGTTAGGCCCATTGCCCATGCATCCTGCAGCTGAAGATAACTATGGTTATGATGCTTGTGCTGTACTCTGCTTACCATGTGTCCCCAACATCTTGGTGATTGCTACTGAATCAGGAATGCTGTATCACTGTGTTGTGCTGGAAGGGGAAGAAGAAGATGACCAAACATCAGAAAAGTCCTGGGATTCCAGGGCAGACCTCATTCCTTCTCTGTATGTGTTTGAGTGTGTGGAGTTGGAGCTTGCCCTGAAACTGGCATCCGGAGAGGACGAGCCCTTTGATTCTGACTTTTCTTGTCCAATCAAACTTCACAGAGACGAAGAAGATAAGGACAGTTTACAGGAACTAGCTACAGAACAGAAATGCTTTGTAGAACACATTCTTTGTACGAAGCCATTGCCATGCAGGCAGCCAGCTCCGATTCGAGGATTCTGGATTGTCCCTGACATTCTGGGGCCTACAATGATCTGCATCACCAGTAACTACGAATGCGTCATAAGGCCTTTACTAAGCACAGTCCATCCAGCGTCTCCTCCCCTGCTTTGTACCCGAGACGATGTTGAAGTGGCACAGTCTCCCCTCCGTATTCTGGCTGAAACCCCGGATTCCTTTGAAAAACATATTAGAAGCATTCTGCAACGTAGTGTTGCAAATCCAGCATTTTTGAAATCATCTGAAAAAGATACGGCTCCTCCTCCCGAAGAATGCCTTCAGCTCATCAGCAGAGCCACCCAGGTGTTCAGAGAACAGTACATTCTTAAACAGGACCTGGCAAAGGAGGAGATTCAGCGGAGGGTCAAATTGTTATGTGACCAAAAAAAGAAACAACTAGAAGATCTCAATTATTGTCGAGAGGAGAGGAAAAGTCTGCGGGAAATGGCCGAGCGCTTAGCTGACAAATATGAGGAAGCCAAGGAAAAACAAGAAGATATCATGATCAGTGAGAGAGACATGAAGAAAGAATTACAGCTGATACCTGATCAACTTCGACATTTGGGCAATGCCATCAAACAGGTTACTATGAAAAAAGACTATCAACAACGAAAGATGGAAAAGGTACTAAGTCCTCAAAAGCCCACCATTACTCTCAGCGCCTACCAGCGAAAATGCATTCAGTCCATCCTGAAGGAGGAGTAA

Related Sequences

bmy_08629T0 Protein

Length: 553 aa      View alignments
>bmy_08629T0
MAVAEGAAGDCELWQAWLPDHAVFLRLQEGRKNQSPAAAEKPASSSLPLPPPLPPQLLTRNLVLGLGGELFLWDGEGSCFLVVRLLDPSGAGEESPLSQYQVTSPQTTDCKISVYKRETAVAFDFGPLSAVPKNIFGQKGKDEVLAYPLYILYENGETFLTYVSLLHSPGSVGKLLGPLPMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLYHCVVLEGEEEDDQTSEKSWDSRADLIPSLYVFECVELELALKLASGEDEPFDSDFSCPIKLHRDEEDKDSLQELATEQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSNYECVIRPLLSTVHPASPPLLCTRDDVEVAQSPLRILAETPDSFEKHIRSILQRSVANPAFLKSSEKDTAPPPEECLQLISRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLNYCREERKSLREMAERLADKYEEAKEKQEDIMISERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQRKMEKVLSPQKPTITLSAYQRKCIQSILKEE*