Part of scaffold_383 (Scaffold)

For more information consult the page for scaffold_383 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CXCL16 ENSTTRG00000007623 (Bottlenosed dolphin)

Gene Details

chemokine (C-X-C motif) ligand 16

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007211, Bottlenosed dolphin)

Protein Percentage 88.76%
cDNA percentage 93.98%
Ka/Ks Ratio 1.27376 (Ka = 0.0682, Ks = 0.0535)

CXCL16 ENSBTAG00000031998 (Cow)

Gene Details

C-X-C motif chemokine 16

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024371, Cow)

Protein Percentage 66.24%
cDNA percentage 78.06%
Ka/Ks Ratio 0.74919 (Ka = 0.2473, Ks = 0.33)

CXCL16  (Minke Whale)

Gene Details

chemokine (C-X-C motif) ligand 16

External Links

Gene match (Identifier: BACU019332, Minke Whale)

Protein Percentage 95.45%
cDNA percentage 97.38%
Ka/Ks Ratio 0.82681 (Ka = 0.0255, Ks = 0.0308)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 840 bp    Location:1233922..1242125   Strand:+
>bmy_08654
ATGCATCAGAATCTCAGGCGTGGCGGGAGAAGGAAGCGAAAGCCATTGAGAAACCGGCTGGACGTCAGGCTCCGGAGCACGTCTGGGAGTCAGACAGGGCGAGGCGGGCCCGAGATGATGCTGGGCTGGGAACTCCGGTTCCTCTTGCTCCTACTCTTTCTAGCGTGCCACACTCCTCCAGGCGATGGCAATGAAGGTAGCATCGCTGGAAGTTGTCCCTGTGATAGAAGAATTTCTTCCCACTCCCCTCCTAACGATCAATACATGGGACATCTCCGAAAATACCTGAAAGTCTATCAACGTTGCTCTTCCTACGTCAGGTTCCAGCTACCCTTGGGAAGTGTGTGTGGAGGCAGCAGTGACCGGTGGGTCCAGGAACTGATGCGCTGCTTTGATCGTGAAGAATGTGGACGTGCTCACGCCAGGAGTGTGGCCCGCCAGGGACATGTACCTCCCCGCAGCACCCAGGTTCCTGAGCCCACAGAAAAGACACCTTCAGCCACGGGCACCCCTGCACAGAAGTACCTGCCATCCACCCTGCAGCCTTCCCAGCAGCCCACCCCTCCAGAAGGAGCACCTTCGTTGGACAAAAAGCTCATCCACCCCAATGAGACTACCACTTACACTTCGGACCACCGTCTGGGGGCAAGGCCTGGGGCCAGGGGGAACCAGAAGCAGCTGGGAGAAAATGTGGGTCCTGCAGCTGGGACATCAGCCATGGTGCCGGTGCTGTCCCTCTTGGGCATCGTTTTCCTCCTCACTGGAGCCCTGCTCTACATGCTGTGCAAGAAGAGGAGGGAGCAGTCACTGCAGTGCCCTCCAGGTAAACTGGGCCTCTGA

Related Sequences

bmy_08654T0 Protein

Length: 280 aa      View alignments
>bmy_08654T0
MHQNLRRGGRRKRKPLRNRLDVRLRSTSGSQTGRGGPEMMLGWELRFLLLLLFLACHTPPGDGNEGSIAGSCPCDRRISSHSPPNDQYMGHLRKYLKVYQRCSSYVRFQLPLGSVCGGSSDRWVQELMRCFDREECGRAHARSVARQGHVPPRSTQVPEPTEKTPSATGTPAQKYLPSTLQPSQQPTPPEGAPSLDKKLIHPNETTTYTSDHRLGARPGARGNQKQLGENVGPAAGTSAMVPVLSLLGIVFLLTGALLYMLCKKRREQSLQCPPGKLGL*