Part of scaffold_389 (Scaffold)

For more information consult the page for scaffold_389 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP54 ENSTTRG00000000841 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 54

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000794, Bottlenosed dolphin)

Protein Percentage 91.46%
cDNA percentage 92.35%
Ka/Ks Ratio 0.43304 (Ka = 0.0134, Ks = 0.031)

USP54 ENSBTAG00000011108 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053743, Cow)

Protein Percentage 91.03%
cDNA percentage 93.75%
Ka/Ks Ratio 0.41762 (Ka = 0.0478, Ks = 0.1145)

USP54  (Minke Whale)

Gene Details

ubiquitin specific peptidase 54

External Links

Gene match (Identifier: BACU001326, Minke Whale)

Protein Percentage 98.35%
cDNA percentage 98.86%
Ka/Ks Ratio 0.43415 (Ka = 0.0087, Ks = 0.02)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4851 bp    Location:621209..577481   Strand:-
>bmy_08677
CCATCTACCTCTTTCTATATCAGAGGAAATGAGGGAATCTTTAACCAGTTTCAGTGCAGTACTGAAAAAGTGCTTCCATCTGACACTCTCCGCAGTGCTCTGGCAAAGACTTTTCAGGATGAACAGCGTTTCCAGCTGGGAATTATGGATGATGCTGCGGAGTGCTTTGAAAACCTCCTGATGAGGATTCACTTCCATATTGCTGATGAAACCAAAGAGGACATATGCACTGCCCAACACTGCATCTCCCACCAGAAATTTGCAATGACGTTGTTTGAGCAGTGTGTATGTACTAGCTGCGGCGCCACTTCTGATCCGCTGCCTTTCATCCAGATGGTGCATTATATCTCCACTACTTCCCTTTGCAATCAGGCTATTTGTATGCTGGAAAGACGAGAAAAACCCTCACCAAGCATGTTTGGTGAGCTGCTGCAGAATGCCAGCACCATGGGGGATCTGCGGAACTGCCCGAGCAACTGTGGAGAGAGGATTCGGATTCGCCGTGTGTTGATGAACGCTCCACAGATTATCACAATTGGACTGGTATGGGACTCGGACCACTCAGACTTGGCAGAGGATGTCATTCACAGCCTGGGCACCTGCCTTAAGCTGGGTGACCTGTTTTTCAGAGTGACAGATGACCGGGCCAAGCAGTCTGAACTGTACTTAGTAGGAATGATCTGTTACTACGGCAAACATTATTCTACATTCTTTTTCCAAACAAAGATCCGCAAATGGATGTATTTTGATGATGCTCACGTCAAGGAGATTGGGCCCAAATGGAAGGATGTGGTGACCAAATGCATCAAGGGGCATTATCAGCCTTTGCTGCTACTTTATGCAGACCCCCAGGGTACCCCAGTGTCCACCCAGGACCTGCCCCCGCAAGTTGCGTTCCAGTCGTACAGCAGGACGTGCTACGATAGTGAGGATTCAGGGAGGGAGCCCTCCATCTCAAGTGATACTCGAACAGATTCTTCAGCGGAGAGCTATCCCTACAACCGCTCCCACCATGAGTCTGTGGTCAGTCACTTCTCTTCTGATTCTCAGGGAACAGTCATCTATAATGTGGAGAACGATTCCACGTCTCAGAGCAGTCGGGACACAGGACACCTGACTGATAGTGAATGTAATCAGAAACTCCCATCCAAGAAAGGGTCACTGATAGAGCGCAAGAGGAGCTCTGGCCGGGTCAGGAGGAAAGGCGATGAGTTTCAGGCCTCAGGGTACCACAGAGAAACACTGAAAGAGAAGCAGGCTCCTAGGAATGCCTCCAAATCATCCAGCAGCACCAACAGGCTAAGGGATTTTAAAGAGACAGTCAGCAATATTATCCATAACAGACCATCCCTGGTTTCTCAGACCAACCTAGGATCTCCCTGTGGGGGGAGGGGAGGAGACCAGACTGACAAAAAACCTCCTCGGAAACTGCCTTTACACTCTCGTGACTGGGAAGTAGAGAGTACCAGCAGTGAGTCAAAATCCAGTTCTTCTAGCAAGTATCGTCCAACATGGAGACCCAAACGGGAGTCTCTCAATATTGACAGTATCTTTAGTAAGGACAAAAGGAAGCACTGTGGCTATACGCAGCTTAGCCCCTTTTCTGAGGATTCAGCTAAAGAATTTACACCAGATGAATTAAGCAAGCCACCTGCTTACGACATTAAGACTGGCGGACCAAGACCCCAGTACAAGATCTGGGGCCCAGTACGGCCAGCCTGTCACCTTTTAGAGCAGCACCCGCGCCTAATCCAGCGAATGGAATCTGGCTATGAGAGCAGTGAGAGGAACAGCAGCAGCCCTGTCAGCCTGGATGCAGCCCTGCCTGAGAGCGCGAATGTCTGCAGGGATACAAGTGCTAAGAGATCAGCTGGGTTGGCCCCTTCCTGGCGTCACATCCCAAAGTCTCACAGTAGTAGCATCCTGGAGGCAGACTCCACAGTATCCAGGAGTGGCTGGACAAAGAATCAGCCCCTCTCAGGTGGGGAGGTGTCTTCCAAAACTGAACTGGATGAATTGCAGGAAGAGGTGGCCAGAAGGGCCCAGGAACAGGAACTTCAAAGGAAACGAGAGAAGGAATTAGAGGCAGCTAAAGGGTTTAACCCTCATCCCAGCCGCTTCATGGACTTAGATGAACTGCAGAATCAGGGGAGGAGTGACGGCTTTGAGAGGTCCCTACAAGAGGCAGATTCAGTGTTTGAAGAGTCGCTGCATCTGGAACAGAAGGGAGACTGTGCTGCCGCTTTGGCTCTCTGTAACGAAGCTATCTCTAAACTAAGACTTGCCCTGCATGGTGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCGATAAGAAGCTGCAAATCAGTATTCGAAAAGCACGGAGCCTGCAGGATCGCATGCAGCAGCAGCAACCATCTCAGCCGCCGTCGCAGCCCTCAGCCTGCCTCCCCTCACAGAGGGGAGCCCTCCCTCAGCCAACAAGTGAACAGCCTATCCCGCTCCAAGTATTGTTAAGCCAGGAGGCCCAACTGGAACCCTACATGAATACAGAGTTTGGGGCCAGTTCTTTCATCCACTCACCCGCTTCCTGCCATGAGTCACACTCGCCATTATTCCCAGAGTCATCTGCCCTGTCTGCTCCACAGCACAATTCCTCCGGTGGGTCTGCCTCGAACCTTCTTACTTCTGTTGAGGTGGACAGCATTGACCCCTCTGTGTTCCACAGGCAGGGCTTACGTAAAACACCAGGGAGAACTGAGAAGAATTCTCATCATGGTTGGAAACCAGAGGGTGAGCTGCAAAGCTACAGGGGGGACAACAGCAGCTGTACCAGGTTCCCCCAACAAGAAGGAAGAAGCACTGATCAAGAACAGCTATTCCAAGAAAAGAGGGATCCTGCTGACTCATCCCAGGTGATGCCTTGGCTACTACAGCCAACTGGAACAACCACCTCGGAGACAGGAGATGCACACAGTCTAGGCTGTGGTCCTTCGAGTTCATCAGCTCAGCCCAGCCTTTCTCTGTACAGGGCCTGCCACCCCATAATGCCTGCTCCTTCCTCATCTGTGCTTCACTCGCCTAATACCTTACAGAAAACTAACCAATGCCTCCAAACCCAAAGCCTCAAAACTTCATTGACTTCAAAAGTGGACGGAGGCAGCGAGGAGCCCTATAGGCCAGAGTTTCCTACCACAAAGGGGCTTGTCCGCGCTCTGGCAGAGCAGTTCCAGAGGATGCAGGGCACCTCCACAAGGGATGGTACAGGTTCCCAGGATAGAAGTTTGCCAAACAGTCTAAGGAAGGACTCTTCCCTTTCTGACTCAAAGCCTCCTTTCCCAAAGGGTCAAGGGAAAGGTCATTGGCCTTGGGCAAAACAACAGCCCTCGGTGGATGGTAGGAACAGACTGCCTTCCTGGGGAGAGCCTGCTGATCATCCTTCTCTTGCCATGAACTCTGGGCTGCCTAATGGTGAAACTTCTAGGGGAGGACAGTCCAGGTTGGCAGAGTCAGGTATTTACCATGGGAAACCGTCTCAAGTGAGAGATGCTAGGCCTAAGGAGCTGGGCAGCAGTGTCGACTTGGGGACTTCCTTGCCTTTGGATTCCTGGGTGAATGTTACAAGGCTTTGTGATTCTCAGCTTGGGGTCCCTGGGCCAGGAATGAAGTCCTCCCCTCCTGATTCCCATACCTGTGTAACCTATCCAGAAAGAAACCACATCCTTTTGCATCCACATTGGAACCAAGACACAGAGCAGGAGACCTCAGAATTGGAGTCTCTCTACCAGGCCAGTCTTCAGGTTTCTCAGTCTGGCTCTTCTGGATGGGGGCAGCAGGAAGTGGCCTGGAACCCACTGAGCCAAACAGGCTCTACAGATGGTGTAGGGAGGAGGTTGCGCTCAGCCCCTGGCCTTGATCTCTCAAAGACCCCGGCAGCAGAAATGGAGCACAGTCTCCATGAAGCCAATACAGTGTCTACTTCTCAGGCTGCATCTTGCCGAGGCCCCAGCAGGGAGTGTGGGGAGGATGATCAGTATGGTGCAGAGAACTTTCGGCGCATCTCACGCAGTCTCAGTGGCACCGTTGTCTCAGAGAGGGAGGAGGTCCCAGTCTCTTCCCACAGTTTTGATTCATCAAACGCGAGGAAAAAGCCTTTGGAAACCGGGCACCGTTGTTCCAGCTCCTCTTCCCTCCCTGTCATCCATGACCCTCCTGTGTTTCTCCTTGGTCCCCAACTCTACCCATCCCAACCACAGTTCCTGTCCCCAGATGTCTTGATGCCCAGCGTGGCAGGGGAGCCCCATAGACCCCCAGGAACTTCGAGGAGTGTCCAGCAGTTTCTGGCTATGTGTGACAGGGGTGAAACTTCCGAAGCGGTCAAGCACACAGGAAGGACTTTGAACTACCGGAGTCTCCCCCATCGTTCCAGAACAGACGCCTCCCGGGGAGCATGGTCAGAGACCAACCAGCATATTGGCACCAGATTCCTGACTACTCCAGGGTGCAAGCCTCAGCTAACCCACACTGCCACACTACCAGAGAGACACCAGGGCCTTCAGGTTCCTCATGCACAGCCCTGGGAGGATCTTTTCCATTCACCCTCCCACCCTCCCATTGTTTACCCTGTGTCCCTACTGTCAAGCAGTCTTCGTGTACCCCTGAGGTCAGCTTGGAATTCAGGTCCTGTTCCAGGGTTTCGAGCCCCTGGTCCTCGAAGGGTAGATATGCCCCCAGATGATGACTGGAGGCAAAGCAGTTATACCCTGCAATCTGGGCACAGGAGGACAGGGAGAGAGGAGTTTCTGTTTGTTCTAGCAGATGCCCCTGGAAGAGAGCAGATCAGGGCTAGAGCCCTGCAGCACAGCAGGTGG

Related Sequences

bmy_08677T0 Protein

Length: 1617 aa      View alignments
>bmy_08677T0
PSTSFYIRGNEGIFNQFQCSTEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIADETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICMLERREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLVWDSDHSDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSTQDLPPQVAFQSYSRTCYDSEDSGREPSISSDTRTDSSAESYPYNRSHHESVVSHFSSDSQGTVIYNVENDSTSQSSRDTGHLTDSECNQKLPSKKGSLIERKRSSGRVRRKGDEFQASGYHRETLKEKQAPRNASKSSSSTNRLRDFKETVSNIIHNRPSLVSQTNLGSPCGGRGGDQTDKKPPRKLPLHSRDWEVESTSSESKSSSSSKYRPTWRPKRESLNIDSIFSKDKRKHCGYTQLSPFSEDSAKEFTPDELSKPPAYDIKTGGPRPQYKIWGPVRPACHLLEQHPRLIQRMESGYESSERNSSSPVSLDAALPESANVCRDTSAKRSAGLAPSWRHIPKSHSSSILEADSTVSRSGWTKNQPLSGGEVSSKTELDELQEEVARRAQEQELQRKREKELEAAKGFNPHPSRFMDLDELQNQGRSDGFERSLQEADSVFEESLHLEQKGDCAAALALCNEAISKLRLALHGASSSTHSRALVDKKLQISIRKARSLQDRMQQQQPSQPPSQPSACLPSQRGALPQPTSEQPIPLQVLLSQEAQLEPYMNTEFGASSFIHSPASCHESHSPLFPESSALSAPQHNSSGGSASNLLTSVEVDSIDPSVFHRQGLRKTPGRTEKNSHHGWKPEGELQSYRGDNSSCTRFPQQEGRSTDQEQLFQEKRDPADSSQVMPWLLQPTGTTTSETGDAHSLGCGPSSSSAQPSLSLYRACHPIMPAPSSSVLHSPNTLQKTNQCLQTQSLKTSLTSKVDGGSEEPYRPEFPTTKGLVRALAEQFQRMQGTSTRDGTGSQDRSLPNSLRKDSSLSDSKPPFPKGQGKGHWPWAKQQPSVDGRNRLPSWGEPADHPSLAMNSGLPNGETSRGGQSRLAESGIYHGKPSQVRDARPKELGSSVDLGTSLPLDSWVNVTRLCDSQLGVPGPGMKSSPPDSHTCVTYPERNHILLHPHWNQDTEQETSELESLYQASLQVSQSGSSGWGQQEVAWNPLSQTGSTDGVGRRLRSAPGLDLSKTPAAEMEHSLHEANTVSTSQAASCRGPSRECGEDDQYGAENFRRISRSLSGTVVSEREEVPVSSHSFDSSNARKKPLETGHRCSSSSSLPVIHDPPVFLLGPQLYPSQPQFLSPDVLMPSVAGEPHRPPGTSRSVQQFLAMCDRGETSEAVKHTGRTLNYRSLPHRSRTDASRGAWSETNQHIGTRFLTTPGCKPQLTHTATLPERHQGLQVPHAQPWEDLFHSPSHPPIVYPVSLLSSSLRVPLRSAWNSGPVPGFRAPGPRRVDMPPDDDWRQSSYTLQSGHRRTGREEFLFVLADAPGREQIRARALQHSRW