Sequence detailsbmy_08677 (Coding sequence)

Part of scaffold_389 (SequenceType object (1))

For more information consult the page for scaffold_389 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP54ENSTTRG00000000841 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 54

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000794, Bottlenosed dolphin)

Protein Percentage 91.46%
cDNA percentage 92.35%
Ka/Ks Ratio 0.43304 (Ka = 0.0134, Ks = 0.031)

USP54ENSBTAG00000011108 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053743, Cow)

Protein Percentage 91.03%
cDNA percentage 93.75%
Ka/Ks Ratio 0.41762 (Ka = 0.0478, Ks = 0.1145)

USP54 (Minke Whale)

Gene Details

ubiquitin specific peptidase 54

External Links

Gene match (Identifier: BACU001326, Minke Whale)

Protein Percentage 98.35%
cDNA percentage 98.86%
Ka/Ks Ratio 0.43415 (Ka = 0.0087, Ks = 0.02)

Additional orthologs identified in other species via the OPTIC pipeline.

USP54 (Human)   Usp54 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4851 bp    Location:621209..577481   Strand:-
Raw sequence 
>bmy_08677
CCATCTACCTCTTTCTATATCAGAGGAAATGAGGGAATCTTTAACCAGTTTCAGTGCAGTACTGAAAAAGTGCTTCCATCTGACACTCTCCGCAGTGCTCTGGCAAAGACTTTTCAGGATGAACAGCGTTTCCAGCTGGGAATTATGGATGATGCTGCGGAGTGCTTTGAAAACCTCCTGATGAGGATTCACTTCCATATTGCTGATGAAACCAAAGAGGACATATGCACTGCCCAACACTGCATCTCCCACCAGAAATTTGCAATGACGTTGTTTGAGCAGTGTGTATGTACTAGCTGCGGCGCCACTTCTGATCCGCTGCCTTTCATCCAGATGGTGCATTATATCTCCACTACTTCCCTTTGCAATCAGGCTATTTGTATGCTGGAAAGACGAGAAAAACCCTCACCAAGCATGTTTGGTGAGCTGCTGCAGAATGCCAGCACCATGGGGGATCTGCGGAACTGCCCGAGCAACTGTGGAGAGAGGATTCGGATTCGCCGTGTGTTGATGAACGCTCCACAGATTATCACAATTGGACTGGTATGGGACTCGGACCACTCAGACTTGGCAGAGGATGTCATTCACAGCCTGGGCACCTGCCTTAAGCTGGGTGACCTGTTTTTCAGAGTGACAGATGACCGGGCCAAGCAGTCTGAACTGTACTTAGTAGGAATGATCTGTTACTACGGCAAACATTATTCTACATTCTTTTTCCAAACAAAGATCCGCAAATGGATGTATTTTGATGATGCTCACGTCAAGGAGATTGGGCCCAAATGGAAGGATGTGGTGACCAAATGCATCAAGGGGCATTATCAGCCTTTGCTGCTACTTTATGCAGACCCCCAGGGTACCCCAGTGTCCACCCAGGACCTGCCCCCGCAAGTTGCGTTCCAGTCGTACAGCAGGACGTGCTACGATAGTGAGGATTCAGGGAGGGAGCCCTCCATCTCAAGTGATACTCGAACAGATTCTTCAGCGGAGAGCTATCCCTACAACCGCTCCCACCATGAGTCTGTGGTCAGTCACTTCTCTTCTGATTCTCAGGGAACAGTCATCTATAATGTGGAGAACGATTCCACGTCTCAGAGCAGTCGGGACACAGGACACCTGACTGATAGTGAATGTAATCAGAAACTCCCATCCAAGAAAGGGTCACTGATAGAGCGCAAGAGGAGCTCTGGCCGGGTCAGGAGGAAAGGCGATGAGTTTCAGGCCTCAGGGTACCACAGAGAAACACTGAAAGAGAAGCAGGCTCCTAGGAATGCCTCCAAATCATCCAGCAGCACCAACAGGCTAAGGGATTTTAAAGAGACAGTCAGCAATATTATCCATAACAGACCATCCCTGGTTTCTCAGACCAACCTAGGATCTCCCTGTGGGGGGAGGGGAGGAGACCAGACTGACAAAAAACCTCCTCGGAAACTGCCTTTACACTCTCGTGACTGGGAAGTAGAGAGTACCAGCAGTGAGTCAAAATCCAGTTCTTCTAGCAAGTATCGTCCAACATGGAGACCCAAACGGGAGTCTCTCAATATTGACAGTATCTTTAGTAAGGACAAAAGGAAGCACTGTGGCTATACGCAGCTTAGCCCCTTTTCTGAGGATTCAGCTAAAGAATTTACACCAGATGAATTAAGCAAGCCACCTGCTTACGACATTAAGACTGGCGGACCAAGACCCCAGTACAAGATCTGGGGCCCAGTACGGCCAGCCTGTCACCTTTTAGAGCAGCACCCGCGCCTAATCCAGCGAATGGAATCTGGCTATGAGAGCAGTGAGAGGAACAGCAGCAGCCCTGTCAGCCTGGATGCAGCCCTGCCTGAGAGCGCGAATGTCTGCAGGGATACAAGTGCTAAGAGATCAGCTGGGTTGGCCCCTTCCTGGCGTCACATCCCAAAGTCTCACAGTAGTAGCATCCTGGAGGCAGACTCCACAGTATCCAGGAGTGGCTGGACAAAGAATCAGCCCCTCTCAGGTGGGGAGGTGTCTTCCAAAACTGAACTGGATGAATTGCAGGAAGAGGTGGCCAGAAGGGCCCAGGAACAGGAACTTCAAAGGAAACGAGAGAAGGAATTAGAGGCAGCTAAAGGGTTTAACCCTCATCCCAGCCGCTTCATGGACTTAGATGAACTGCAGAATCAGGGGAGGAGTGACGGCTTTGAGAGGTCCCTACAAGAGGCAGATTCAGTGTTTGAAGAGTCGCTGCATCTGGAACAGAAGGGAGACTGTGCTGCCGCTTTGGCTCTCTGTAACGAAGCTATCTCTAAACTAAGACTTGCCCTGCATGGTGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCGATAAGAAGCTGCAAATCAGTATTCGAAAAGCACGGAGCCTGCAGGATCGCATGCAGCAGCAGCAACCATCTCAGCCGCCGTCGCAGCCCTCAGCCTGCCTCCCCTCACAGAGGGGAGCCCTCCCTCAGCCAACAAGTGAACAGCCTATCCCGCTCCAAGTATTGTTAAGCCAGGAGGCCCAACTGGAACCCTACATGAATACAGAGTTTGGGGCCAGTTCTTTCATCCACTCACCCGCTTCCTGCCATGAGTCACACTCGCCATTATTCCCAGAGTCATCTGCCCTGTCTGCTCCACAGCACAATTCCTCCGGTGGGTCTGCCTCGAACCTTCTTACTTCTGTTGAGGTGGACAGCATTGACCCCTCTGTGTTCCACAGGCAGGGCTTACGTAAAACACCAGGGAGAACTGAGAAGAATTCTCATCATGGTTGGAAACCAGAGGGTGAGCTGCAAAGCTACAGGGGGGACAACAGCAGCTGTACCAGGTTCCCCCAACAAGAAGGAAGAAGCACTGATCAAGAACAGCTATTCCAAGAAAAGAGGGATCCTGCTGACTCATCCCAGGTGATGCCTTGGCTACTACAGCCAACTGGAACAACCACCTCGGAGACAGGAGATGCACACAGTCTAGGCTGTGGTCCTTCGAGTTCATCAGCTCAGCCCAGCCTTTCTCTGTACAGGGCCTGCCACCCCATAATGCCTGCTCCTTCCTCATCTGTGCTTCACTCGCCTAATACCTTACAGAAAACTAACCAATGCCTCCAAACCCAAAGCCTCAAAACTTCATTGACTTCAAAAGTGGACGGAGGCAGCGAGGAGCCCTATAGGCCAGAGTTTCCTACCACAAAGGGGCTTGTCCGCGCTCTGGCAGAGCAGTTCCAGAGGATGCAGGGCACCTCCACAAGGGATGGTACAGGTTCCCAGGATAGAAGTTTGCCAAACAGTCTAAGGAAGGACTCTTCCCTTTCTGACTCAAAGCCTCCTTTCCCAAAGGGTCAAGGGAAAGGTCATTGGCCTTGGGCAAAACAACAGCCCTCGGTGGATGGTAGGAACAGACTGCCTTCCTGGGGAGAGCCTGCTGATCATCCTTCTCTTGCCATGAACTCTGGGCTGCCTAATGGTGAAACTTCTAGGGGAGGACAGTCCAGGTTGGCAGAGTCAGGTATTTACCATGGGAAACCGTCTCAAGTGAGAGATGCTAGGCCTAAGGAGCTGGGCAGCAGTGTCGACTTGGGGACTTCCTTGCCTTTGGATTCCTGGGTGAATGTTACAAGGCTTTGTGATTCTCAGCTTGGGGTCCCTGGGCCAGGAATGAAGTCCTCCCCTCCTGATTCCCATACCTGTGTAACCTATCCAGAAAGAAACCACATCCTTTTGCATCCACATTGGAACCAAGACACAGAGCAGGAGACCTCAGAATTGGAGTCTCTCTACCAGGCCAGTCTTCAGGTTTCTCAGTCTGGCTCTTCTGGATGGGGGCAGCAGGAAGTGGCCTGGAACCCACTGAGCCAAACAGGCTCTACAGATGGTGTAGGGAGGAGGTTGCGCTCAGCCCCTGGCCTTGATCTCTCAAAGACCCCGGCAGCAGAAATGGAGCACAGTCTCCATGAAGCCAATACAGTGTCTACTTCTCAGGCTGCATCTTGCCGAGGCCCCAGCAGGGAGTGTGGGGAGGATGATCAGTATGGTGCAGAGAACTTTCGGCGCATCTCACGCAGTCTCAGTGGCACCGTTGTCTCAGAGAGGGAGGAGGTCCCAGTCTCTTCCCACAGTTTTGATTCATCAAACGCGAGGAAAAAGCCTTTGGAAACCGGGCACCGTTGTTCCAGCTCCTCTTCCCTCCCTGTCATCCATGACCCTCCTGTGTTTCTCCTTGGTCCCCAACTCTACCCATCCCAACCACAGTTCCTGTCCCCAGATGTCTTGATGCCCAGCGTGGCAGGGGAGCCCCATAGACCCCCAGGAACTTCGAGGAGTGTCCAGCAGTTTCTGGCTATGTGTGACAGGGGTGAAACTTCCGAAGCGGTCAAGCACACAGGAAGGACTTTGAACTACCGGAGTCTCCCCCATCGTTCCAGAACAGACGCCTCCCGGGGAGCATGGTCAGAGACCAACCAGCATATTGGCACCAGATTCCTGACTACTCCAGGGTGCAAGCCTCAGCTAACCCACACTGCCACACTACCAGAGAGACACCAGGGCCTTCAGGTTCCTCATGCACAGCCCTGGGAGGATCTTTTCCATTCACCCTCCCACCCTCCCATTGTTTACCCTGTGTCCCTACTGTCAAGCAGTCTTCGTGTACCCCTGAGGTCAGCTTGGAATTCAGGTCCTGTTCCAGGGTTTCGAGCCCCTGGTCCTCGAAGGGTAGATATGCCCCCAGATGATGACTGGAGGCAAAGCAGTTATACCCTGCAATCTGGGCACAGGAGGACAGGGAGAGAGGAGTTTCTGTTTGTTCTAGCAGATGCCCCTGGAAGAGAGCAGATCAGGGCTAGAGCCCTGCAGCACAGCAGGTGG

Related Sequences

bmy_08677T0 SequenceType object (3)

Length: 1617 aa      View alignments
>bmy_08677T0
PSTSFYIRGNEGIFNQFQCSTEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIADETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICMLERREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLVWDSDHSDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSTQDLPPQVAFQSYSRTCYDSEDSGREPSISSDTRTDSSAESYPYNRSHHESVVSHFSSDSQGTVIYNVENDSTSQSSRDTGHLTDSECNQKLPSKKGSLIERKRSSGRVRRKGDEFQASGYHRETLKEKQAPRNASKSSSSTNRLRDFKETVSNIIHNRPSLVSQTNLGSPCGGRGGDQTDKKPPRKLPLHSRDWEVESTSSESKSSSSSKYRPTWRPKRESLNIDSIFSKDKRKHCGYTQLSPFSEDSAKEFTPDELSKPPAYDIKTGGPRPQYKIWGPVRPACHLLEQHPRLIQRMESGYESSERNSSSPVSLDAALPESANVCRDTSAKRSAGLAPSWRHIPKSHSSSILEADSTVSRSGWTKNQPLSGGEVSSKTELDELQEEVARRAQEQELQRKREKELEAAKGFNPHPSRFMDLDELQNQGRSDGFERSLQEADSVFEESLHLEQKGDCAAALALCNEAISKLRLALHGASSSTHSRALVDKKLQISIRKARSLQDRMQQQQPSQPPSQPSACLPSQRGALPQPTSEQPIPLQVLLSQEAQLEPYMNTEFGASSFIHSPASCHESHSPLFPESSALSAPQHNSSGGSASNLLTSVEVDSIDPSVFHRQGLRKTPGRTEKNSHHGWKPEGELQSYRGDNSSCTRFPQQEGRSTDQEQLFQEKRDPADSSQVMPWLLQPTGTTTSETGDAHSLGCGPSSSSAQPSLSLYRACHPIMPAPSSSVLHSPNTLQKTNQCLQTQSLKTSLTSKVDGGSEEPYRPEFPTTKGLVRALAEQFQRMQGTSTRDGTGSQDRSLPNSLRKDSSLSDSKPPFPKGQGKGHWPWAKQQPSVDGRNRLPSWGEPADHPSLAMNSGLPNGETSRGGQSRLAESGIYHGKPSQVRDARPKELGSSVDLGTSLPLDSWVNVTRLCDSQLGVPGPGMKSSPPDSHTCVTYPERNHILLHPHWNQDTEQETSELESLYQASLQVSQSGSSGWGQQEVAWNPLSQTGSTDGVGRRLRSAPGLDLSKTPAAEMEHSLHEANTVSTSQAASCRGPSRECGEDDQYGAENFRRISRSLSGTVVSEREEVPVSSHSFDSSNARKKPLETGHRCSSSSSLPVIHDPPVFLLGPQLYPSQPQFLSPDVLMPSVAGEPHRPPGTSRSVQQFLAMCDRGETSEAVKHTGRTLNYRSLPHRSRTDASRGAWSETNQHIGTRFLTTPGCKPQLTHTATLPERHQGLQVPHAQPWEDLFHSPSHPPIVYPVSLLSSSLRVPLRSAWNSGPVPGFRAPGPRRVDMPPDDDWRQSSYTLQSGHRRTGREEFLFVLADAPGREQIRARALQHSRW