Sequence details bmy_08688 (Coding sequence)

Part of scaffold_389 (Scaffold)

For more information consult the page for scaffold_389 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VCL ENSTTRG00000006192 (Bottlenosed dolphin)

Gene Details

vinculin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005888, Bottlenosed dolphin)

Protein Percentage 90.3%
cDNA percentage 90.36%
Ka/Ks Ratio 0.28756 (Ka = 0.0083, Ks = 0.029)

BT.102875 ENSBTAG00000021879 (Cow)

Gene Details

vinculin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053644, Cow)

Protein Percentage 98.85%
cDNA percentage 96.84%
Ka/Ks Ratio 0.05545 (Ka = 0.0056, Ks = 0.101)

VCL  (Minke Whale)

Gene Details

vinculin

External Links

Gene match (Identifier: BACU001320, Minke Whale)

Protein Percentage 99.77%
cDNA percentage 99.51%
Ka/Ks Ratio 0.08749 (Ka = 0.0011, Ks = 0.0131)

Additional orthologs identified in other species via the OPTIC pipeline.

VCL (Human)   Vcl (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3135 bp    Location:968987..1066072   Strand:+
Raw sequence 
>bmy_08688
ATGCCGGTGTTTCATACGCGCACGATTGAGAGCATTCTGGAGCCGGTGGCGCAGCAGATCTCGCACCTGGTGATCATGCACGAGGAAGGCGAGGTGGACGGCAAAGCCATCCCTGACCTCACCGCGCCTGTGGCCGCCGTGCAGGCGGCCGTCAGTAACCTCGTTCGGGTTGGAAAAGAGACTGTTCAGACCACTGAGGATCAGATTTTGAAGAGAGATATGCCACCAGCATTTATTAAGGTGGAGAATGCTTGCACCAAGCTTGTCCAGGCAGCCCAGATGCTTCAGTCAGACCCTTACTCAGTGCCTGCTCGAGATTATCTAATTGATGGATCAAGGGGCATCCTCTCCGGCACATCAGACCTGCTCCTCACCTTCGACGAGGCTGAGGTTCGTAAAATTATTAGAGTTTGCAAAGGAATTTTGGAATATCTTACAGTGGCAGAGGTGGTGGAAACTATGGAAGATTTGGTCACTTACACAAAGAATCTTGGACCAGGAATGACTAAGATGGCCAAGATGATTGATGAGAGGCAGCAGGAACTGACTCACCAGGAGCACCGAGTGATGTTGGTGAACTCAATGAACACCGTGAAGGAGTTGCTGCCAGTTCTCATTTCAGCTATGAAGATTTTTGTAACAACTAAAAACTCAAAAAACCAAGGAATTGAAGAAGCTTTGAAAAATCGTAATTTTACTGTAGAAAAGATGAGCGCTGAAATTAATGAGATCATTCGTGTATTACAACTCACTTCTTGGGACGAAGATGCCTGGGCCAGCAAGGACACTGAAGCCATGAAGAGAGCGTTGGCCTCCATAGACTCCAAACTGAACCAGGCTAAAGGTTGGCTCCGTGACCCCAGTGCCTCCCCAGATGAAGCTGGAAAAGTTGGTGAACTCTGTGCAGGCAAAGAACGCAGGGAGATCCTGGGAACCTGCAAAATGCTAGGGCAGATGACTGATCAAGTGGCTGACCTCCGAGCCAGAGGACAAGGAGCCTCACCGGTGGCCATGCAGAAAGCCCAGCAGGTGTCTCAGGGTCTGGATGTGCTCACAGCAAAAGTGGAAAATGCAGCCCGCAAGCTGGAAGCCATGACCAACTCAAAGCAGAGCATTGCGAAGAAGATCGATGCTGCTCAGAATTGGCTTGCAGATCCAAATGGTGGACCAGAAGGGGAAGAACAGATTCGAGGGGCTTTGGCTGAAGCTCGGAAAATAGCAGAATTATGTGATGATCCTAAAGAGAGAGAAGACATTCTACGTTCTCTTGGAGAAATATCTGCTCTGACTTCTAAATTAGCAGATCTACGAAGACAGGGAAAAGGAGATTCCCCAGAGGCCCGAGCATTGGCCAAACAGGTGGCCACGGCCCTACAGAACTTGCAGACCAAAACCAACAAGGCTGTGGCCAACAGCAGACCTGCCAAAGCAGCTGTCCACCTTGAGGGCAAGATTGAGCAGGCACAGCGGTGGATTGATAATCCCACAGTGGATGACCGGGGGGTTGGTCAGGCTGCCATCCGAGGGCTTGTGGCCGAAGGTCATCGTCTGGCAAATGTCATGATGGGGCCTTATCGCCAAGATCTTCTTGCAAAGTGTGACCGAGTGGACCAGCTGACAGCCCAGCTGGCTGACCTGGCTGCCAGAGGGGAAGGGGAGAGTCCTCAGGCGAGAGCCCTTGCATCTCAGCTCCAAGACTCTTTAAAGGTATTTGATGAGAGGGCAGCTAACTTTGAAAACCATTCAGGAAGGCTTGGGGCCACGGCAGAGAAGGCGGCTGCTGTTGGAACTGCTAATAAATCAACGGTGGAAGGCATTCAGGCCTCAGTGAAGACAGCCCGAGAACTCACACCCCAGGTCGTCTCAGCGGCTCGCATCTTACTTAGGAATCCCGGAAATCAAGCTGCTTATGAACATTTTGAGACCATGAAGAACCAGTGGATCGATAATGTTGAAAAAATGACAGGGCTGGTGGACGAAGCCATTGACACCAAATCTCTGTTGGATGCTTCCGAAGAAGCAATTAAAAAAGACCTGGACAAGTGTAAAGTCGCCATGGCCAATATTCAGCCTCAGATGCTGGTCGCTGGGGCAACCAGCATTGCTCGTCGGGCCAACCGGATCCTGCTGGTTGCTAAGAGGGAGGTGGAGAACTCTGAGGATCCCAAGTTCCGAGAGGCCGTGAAAGCCGCCTCTGACGAATTGAGCAAAACCATCTCCCCAATGGTGGTGGATGCAAAGGCTGTGGCAGGAAACATTTCTGACCCTGGCCTGCAAAAGAGCTTCCTGGACTCAGGATACCGGATCCTGGGAGCAGTGGCCAAGGTCAGAGAAGCCTTCCAACCTCAGGAGCCTGACTTCCCGCCTCCTCCGCCAGACCTTGAACAGCTCCGACTGACAGATGAGCTTGCTCCTCCCAAACCACCTCTGCCTGAGGGTGAGGTCCCTCCTCCCAGGCCCCCACCACCAGAGGAGAAGGATGAAGAGTTCCCTGAGCAGAAAGCTGGGGAGGTGATTAACCAGCCAATGATGATGGCTGCCAGGCAGCTCCATGATGAAGCTCGCAAATGGTCCAGCAAGCCGGGTAACCCAGCCGCTGAGGTGGGTGTAAGTGCTGTAGCTGAGGCAGATGCGGCTGCTGCTGTTGGGTCCCCTGTCCCCCCTGACATGGAAGACGATTACGAACCTGAGCTGCTGCTAGTGCCATCCAGTCAGCCGGTCAACCAGCCCATTCTGGCAGCGGCTCAGTCATTGCATCGGGAAGCTACCAAGTGGTCTAGTAAGGGCAATGACATCATTGCAGCAGCCAAGCGCATGGCTCTGCTGATGGCTGAGATGTCTCGGCTGGTCAGAGGGGGCAGCGGTACCAAGCGGGCACTGATTCAGTGTGCCAAGGACATAGCCAAGGCCTCAGATGAGGTGACTCGGTTGGCCAAGGAGGTTGCCAAGCAGTGCACAGATAAGCGGATTAGAACCAACCTCTTACAGGCCACAGAGATGCTGGTTCACAATGCCCAGAACCTCATGCAGTCTGTGAAGGAGACTGTTCGAGAAGCAGAAGCAGCTTCAATCAAAATTCGAACAGATGCTGGATTTACACTGCGCTGGGTTAGAAAGACTCCATGGTACCAGTAG

Related Sequences

bmy_08688T0 Protein

Length: 1045 aa      View alignments
>bmy_08688T0
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPSASPDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAELCDDPKEREDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNKAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKVFDERAANFENHSGRLGATAEKAAAVGTANKSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVVDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEPDFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGNPAAEVGVSAVAEADAAAAVGSPVPPDMEDDYEPELLLVPSSQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ*