Part of scaffold_399 (Scaffold)

For more information consult the page for scaffold_399 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SLC5A7 ENSTTRG00000005597 (Bottlenosed dolphin)

Gene Details

solute carrier family 5 (choline transporter), member 7

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005281, Bottlenosed dolphin)

Protein Percentage 98.33%
cDNA percentage 97.28%
Ka/Ks Ratio 0.11077 (Ka = 0.0088, Ks = 0.0792)

SLC5A7 ENSBTAG00000004352 (Cow)

Gene Details

high affinity choline transporter 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005693, Cow)

Protein Percentage 93.91%
cDNA percentage 90.59%
Ka/Ks Ratio 0.09474 (Ka = 0.0325, Ks = 0.3432)

SLC5A7  (Minke Whale)

Gene Details

solute carrier family 5 (sodium/choline cotransporter), member 7

External Links

Gene match (Identifier: BACU012339, Minke Whale)

Protein Percentage 98.9%
cDNA percentage 98.9%
Ka/Ks Ratio 0.21445 (Ka = 0.0051, Ks = 0.0239)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1641 bp    Location:556018..538179   Strand:-
>bmy_08734
ATGTCAGGAGCCAGCACTTTCCAGGTGGAAGGGCTGATAGCCATCGTGGCGTTCTACCTCCTCATATTGCTGGTTGGAATATGGGCTGCGTGGAGAACCAAGAACAGCGGCAGCTCGGGGGAGCGCAGCGAGGCCATCATTGTGGGTGGCCGCGACATCGGGCTGCTGGTGGGCGGATTCACCATGACAGGTGGTCTGTTCTTTGCCAAACCCATGCGTTCCAAGGGATAYGTGACCATGTTAGACCCCTTTCAGCAGATCTATGGAAAGCGCATGGGAGGGCTCCTGTTCATTCCCGCACTGATGGGGGAAATGTTCTGGGCTGCGGCCATTTTCTCTGCCTTAGGAGCCACTATCAGCGTGATCATTAGCACCGATGTGCGCGTGTCCGTCATTGTCTCCGCCCTTATCGCCACGCTGTACACCCTGGTGGGCGGGCTCTACGCCGTGGCCTACACAGATGTCGTTCAGCTCTTCTGCATTTTCGTGGGACTGTGGGTCAGCGTCCCCTTCGCGCTGTCACATTCTGCGGTAGCTGACATCGGGTTCACGGCCGTGCACACCAAGTACCAGAAGCCCTGGCTGGGGACCATTGAGCCGTTTGAAGTCTACACGTGGCTTGATAGCTTTCTGTTGTTGATGCTGGGTGGAATCCCGTGGCAAGCCTACTTCCAGAGGGTCCTGTCTTCATCCTCAGCCACCTAYGCTCAAGTGCTGTCCTTCCTGGCAGCTTTCGGGTGCATGGTGATGGCTCTGCCAGCCATACTCATTGGAGCCATTGGCGCATCAACAGACTGGAGCCAGACTGGATACGGGCCTCTCGACCCCAAGGACAACCAACAGGCAGACATGATCTTGCCGATTGTCCTGAAGTATCTCTGCCCTGTGTACATTTCTTACTTTGGTCTTGGAGCCGTTTCTGCTGCTGTCATGTCATCAGCAGATTCTTCCATCTTGTCAGCAAGTTCGATGTTTGCTCGCAACATCTACCAGCTTTCCTTCAGACAAAACGCTTCCGACAAGGAGCTCGTCTGGGTCATGCGCATCACGGTGTTCGTGTTTGGAGCTTCTGCAATGACCATGGCCTTGCTGACGAAGACGGTGTACGGGCTCTGGTACCTCAGCTCCGACCTCGTATACATCATCATCTTCCCGCAGCTGCTCTGCGTGCTCTTCATCAAGGGGACCAACACGTATGGGGCCGTGGCAGGTTACATTTCTGGCCTTTTCCTGAGAGTAACCGGCGGGGAGCCGTACCTGAACCTGCAGCCCTTGATCTTTTACCCTGGTTATTACATTGATAAAAGTGGCATATATAATCAGAGATTCCCATTTAAAACCCTTGCCATGGTGACCTCATTCTTATCCAACATTTGCATCTCTTATTTAGCCAAATACCTATTTGAAAGTGGAACCTTGCCACCAAAATTAGATGTATTTGATGCTGTCGTTGCAAGGCACAGTGAAGAAAACATGGATAGGACAATTCTGGTCAGAAATGAAAATATTAAGCTAGATGAACTTGCACCTGTGAAGCCTCGGCAGAGCATAACTCTCAGCTCGACTTTCACCAATCAGGAGGCCCTCCTCAACATGGATTCCAGTCCAGAGGGGTCTGGGACTGAAGATAATTTACAATAA

Related Sequences

bmy_08734T0 Protein

Length: 547 aa      View alignments
>bmy_08734T0
MSGASTFQVEGLIAIVAFYLLILLVGIWAAWRTKNSGSSGERSEAIIVGGRDIGLLVGGFTMTGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIISTDVRVSVIVSALIATLYTLVGGLYAVAYTDVVQLFCIFVGLWVSVPFALSHSAVADIGFTAVHTKYQKPWLGTIEPFEVYTWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCMVMALPAILIGAIGASTDWSQTGYGPLDPKDNQQADMILPIVLKYLCPVYISYFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKELVWVMRITVFVFGASAMTMALLTKTVYGLWYLSSDLVYIIIFPQLLCVLFIKGTNTYGAVAGYISGLFLRVTGGEPYLNLQPLIFYPGYYIDKSGIYNQRFPFKTLAMVTSFLSNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDRTILVRNENIKLDELAPVKPRQSITLSSTFTNQEALLNMDSSPEGSGTEDNLQ*