Part of scaffold_407 (Scaffold)

For more information consult the page for scaffold_407 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HNF4A ENSTTRG00000013004 (Bottlenosed dolphin)

Gene Details

hepatocyte nuclear factor 4, alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012345, Bottlenosed dolphin)

Protein Percentage 87.08%
cDNA percentage 86.2%
Ka/Ks Ratio 0.01618 (Ka = 0.0012, Ks = 0.0729)

HNF4A ENSBTAG00000012116 (Cow)

Gene Details

hepatocyte nuclear factor 4-alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016078, Cow)

Protein Percentage 99.12%
cDNA percentage 94.51%
Ka/Ks Ratio 0.01441 (Ka = 0.0047, Ks = 0.328)

HNF4A  (Minke Whale)

Gene Details

hepatocyte nuclear factor 4, alpha

External Links

Gene match (Identifier: BACU015475, Minke Whale)

Protein Percentage 99.56%
cDNA percentage 98.83%
Ka/Ks Ratio 0.05982 (Ka = 0.0028, Ks = 0.0467)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1548 bp    Location:386462..412955   Strand:+
>bmy_08766
AGGCAGAGAGGGCACCTGGGAGGAGGCGGTGGGAGGGCGGAGGGCGGGGGCTGGGGCTCGGCCCAGAGCCTTCGGGGTGGGCATCCTGGGCAGGGCAGGTGGCCGAGGTGTGAAGAGGGGAGGATGCGCCTCTCCAAAACCCTTGTCGACATGGACATGGCCGACTACAGTGCTGCGCTGGACCCAGCCTACACCACCCTGGAGTTTGAGAATGTGCAGGTGTTGACGATGGGCAATGACACATCCCCATCTGAAGGTGCCAACCTCAACGCACCCAACAGCCTGGGTGTCAGCGCCCTGTGTGCCATCTGTGGGGACCGGGCCACAGGCAAACATTATGGTGCCTCAAGCTGTGACGGTTGCAAGGGCTTCTTCCGGAGGAGTGTAAGAAAGAACCACATGTACTCCTGCAGATTCAGCCGGCAGTGTGTGGTGGACAAAGACAAGAGGAACCAGTGCCGCTACTGCAGGCTCAAGAAGTGCTTCCGGGCCGGCATGAAGAAGGAAGCCGTCCAGAATGAACGGGACCGGATCAGCACTCGCAGGTCRAGCTACGAGGACAGCAGCCTGCCCTCCATCAACGCGCTCCTGCAGGCCGAGGTCCTGTCCCAGCAGATCACCTCCCCTGTCTCTGGAATCAATGGTGACATTCGGGCAAAGAAGATCGCCAGCATCGCGGATGTGTGTGAGTCCATGAAAGAGCAGCTGCTGGTGCTTGTCGAGTGGGCCAAGTACATCCCAGCTTTCTGCGAGCTCCCCTTGGACGACCAGGTGGCCCTGCTCAGAGCCCATGCTGGCGAGCACCTGCTGCTCGGAGCCACCAAGCGCTCCATGGTGTTCAAGGACGTTCTGCTTCTAGGCAATGACTACATCGTCCCTCGGCACTGCCCAGAGCTGGCAGAGATGAGCCGTGTGTCCGTGCGCATCCTGGATGAGCTGGTGCTGCCCTTTCAGGAGCTGCAGATCGATGACAACGAGTACGCCTGCCTCAAAGCCATCATCTTCTTTGACCCAGATGCCAAGGGGCTGAGCGACCCAGGCAAGATCAAGAGGCTGCGTTCCCAGGTGCAGGTGAGCCTGGAGGACTACATCAACGACCGCCAGTACGACTCACGCGGCCGCTTCGGCGAGCTGCTGCTGCTGCTGCCCACCCTACAGAGCATCACCTGGCAGATGATCGAGCAGATCCAGTTCATCAAGCTCTTTGGCATGGCCAAGATCGACAACCTGCTGCAGGAGATGCTGCTGGGAGGGTCCTCCAGTGATGCACCTCATGCCCATCACCCCCTGCACCCTCACCTGATGCAGGAACACATGGGCACCAACGTCATTGTTGCCAACACGATGCCTGCTCACCTCAGCAACGGACAGATGTGTGAGTGGCCCCGACCCAGGGGGCAGGCAGCCACCCCTGAGACTCCACAGCCCTCGCCGCCAGGTGGCTCGGGGTCTGAGCCCTACAAGCTCCTGCCAGGAGCCATCGCCACAATCGTCAAGCCCCCCTCTGCAATCCCGCAGCCGACCATCACCAAGCAGGAAGTCATCTAG

Related Sequences

bmy_08766T0 Protein

Length: 516 aa      View alignments
>bmy_08766T0
RQRGHLGGGGGRAEGGGWGSAQSLRGGHPGQGRWPRCEEGRMRLSKTLVDMDMADYSAALDPAYTTLEFENVQVLTMGNDTSPSEGANLNAPNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERDRISTRRSSYEDSSLPSINALLQAEVLSQQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSVRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGGSSSDAPHAHHPLHPHLMQEHMGTNVIVANTMPAHLSNGQMCEWPRPRGQAATPETPQPSPPGGSGSEPYKLLPGAIATIVKPPSAIPQPTITKQEVI*