Part of scaffold_407 (Scaffold)

For more information consult the page for scaffold_407 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PABPC1L ENSTTRG00000007618 (Bottlenosed dolphin)

Gene Details

poly(A) binding protein, cytoplasmic 1-like

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007204, Bottlenosed dolphin)

Protein Percentage 89.17%
cDNA percentage 91.74%
Ka/Ks Ratio 0.41885 (Ka = 0.0709, Ks = 0.1692)

PABPC1L ENSBTAG00000016849 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022412, Cow)

Protein Percentage 81.53%
cDNA percentage 85.48%
Ka/Ks Ratio 0.29936 (Ka = 0.118, Ks = 0.3942)

PABPC1L  (Minke Whale)

Gene Details

poly(A) binding protein, cytoplasmic 1-like

External Links

Gene match (Identifier: BACU015465, Minke Whale)

Protein Percentage 92.26%
cDNA percentage 93.12%
Ka/Ks Ratio 0.29837 (Ka = 0.0533, Ks = 0.1787)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1899 bp    Location:880905..900945   Strand:+
>bmy_08776
CTCCCAATTACGCTCTTTGGGGCTCAGGGAAAGAAAATCCCCTTCACTAGCTCCTTTCTCTCCTCTTGTCCAGCGGAGCGGGCACTGGACACAATGAACTTTGAGGTGATCAAAGGCCAGCCCATCCGCATCATGTGGTCCCAACGAGACCCAGGACTTCGCAAGTCGGGTGTCGGCAACATCTTCATCAAGAACCTGGAAGACTCCATTGACAACAAGGCCTTGTATGACACCTTCTCCACCTTTGGGAACATCCTCTCTTGCAAGGTGGTGTGTGATGATCATGGCTCCCGAGGCTTTGGCTTTGTGCATTTTGAGACCCATGAGGCTGCACAGAACGCCATCAGCACCATGAATGGGATGCTGCTGAATGACCGCAAAGTCTTCGTTGGCCACTTCAAGCCCCGACGGGAGCGGGATGCAGAGCTGGGAGCTCGGGCCATGGAGTTCACCAATATCTACGTGAAGAACCTCCACGTGGACGTGAATGAGCAGTGCCTGCAGGACCTCTTCTCCCAGTTTGGGAAGATACTGAGTGTCAAGGTGATGAGGGATGACAGCGGCCACTCCCGCGGCTTTGGCTTTGTCAACTTTGAGACGCATGAGGAAGCCCAGAAGGCTGTGATGGACATGAACGGGAGGGAGGTGCGTGGACGGCTGCTCTACGTCGGCCGGGCCCAGAAGCGGGTGGAGCGGCAGAATGAGCTGAAGCGCAGGTTCGAGCAGATGAAGCAGGACCGGCTGACCCGTTACCAGGGCGTGAACCTGTATGTGAAGAACCTGGATGACTCCATCGATGATGAGAAACTGAGGAAAGAGTTCTCTCCCTATGGAGTGATCACCAGTGCCAAGGTGATGACAGAGGGTGGCCACAGCAAAGGGTTTGGCTTTGTGTGTTTTTCCTCTCCAGAAGAGGCGACGAAGGCCGTGACAGAGATGAACGGGCGCATCGTGGGGACCAAGCCACTGTACGTGGCACTGGCCCAGCGCAAGGAGGAGCGGAGGGCCATCCTGACCAACCAGTACATGCAGCGCCTCTCCACCATGCGGGCCCTGGGCAGCCCCCTTCTGGGCTCCTTCCAGCAGCCTGCCAGCTACTTCCTGCCCGCTGCGCCCCAGGTGACCTCCTGTCCGCATCCCTTCCCTGACAGCCAGCCTCCAGCCCAGGCCCCATACTATGGCTCTGGCCCACCCGCCTACCCGCCTGCGGCCTCGGTTGTCCAGCCAGCAGCCGTGTCTCGGCGCCCCTCGGTCTCCATCGGCAGTGCCAGGCAGATCTCCAACCACGTGCCGCGCCTGGTGCCCCACGCCCAGGGAGTGGCCAACATCGGTACCCAGACCACAGGACCCGGTGTGGCAGGATGCTCTTCACCAAGGGGGCCTCTCCTGACACACAGATGTTCCTTGGCAACACACAACACCCACCGGGTCCAGGAGCCTGCTGTGCGCGTCCCCGGACAGGAGCCCCTGACTGCGTCCATGCTGGCCGCAGCGCCGCTGCACGAGCAGAAGCAGATGATCGGTGAGCGTCTCTACCCCCTTATCTACAATGTCCACACCCAGCTGGCTGGCAAGATCACGGGCATGCTGCTGGAGATCGACAACTCGGAGCTGCTGCTCCTGCTGGAGTCCCCAGAGTCCCTCAACGCCAAGGTGGGCTGGAGCCTGCGAGGAGCGGGGAGGCCTGGGGGCAGAGGAGGGTTACCGATCAAGGCCTCTCCTAGGCGAGCCGGTAGGCTGCTGCTTAGACAGGTGAAGTGTATCTTCTTGCTGAAATCAGCTAATACCTGCAGAATGTGGAGGTGGCAGAGGGCTTTAGTGAAGGGCCGGCTGCTTCAGCCCCTGCGGCCTCCCTGCAGCTCCGCAGGCAAGACTGTGCGACAGGGCGCTGTGTTCTGA

Related Sequences

bmy_08776T0 Protein

Length: 633 aa      View alignments
>bmy_08776T0
LPITLFGAQGKKIPFTSSFLSSCPAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKPRRERDAELGARAMEFTNIYVKNLHVDVNEQCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFETHEEAQKAVMDMNGREVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERRAILTNQYMQRLSTMRALGSPLLGSFQQPASYFLPAAPQVTSCPHPFPDSQPPAQAPYYGSGPPAYPPAASVVQPAAVSRRPSVSIGSARQISNHVPRLVPHAQGVANIGTQTTGPGVAGCSSPRGPLLTHRCSLATHNTHRVQEPAVRVPGQEPLTASMLAAAPLHEQKQMIGERLYPLIYNVHTQLAGKITGMLLEIDNSELLLLLESPESLNAKVGWSLRGAGRPGGRGGLPIKASPRRAGRLLLRQVKCIFLLKSANTCRMWRWQRALVKGRLLQPLRPPCSSAGKTVRQGAVF*