Part of scaffold_407 (Scaffold)

For more information consult the page for scaffold_407 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MATN4 ENSTTRG00000013804 (Bottlenosed dolphin)

Gene Details

matrilin 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013093, Bottlenosed dolphin)

Protein Percentage 92.74%
cDNA percentage 93.69%
Ka/Ks Ratio 0.27967 (Ka = 0.0463, Ks = 0.1654)

MATN4 ENSBTAG00000011279 (Cow)

Gene Details

matrilin-4 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014986, Cow)

Protein Percentage 86.57%
cDNA percentage 86.81%
Ka/Ks Ratio 0.14762 (Ka = 0.0811, Ks = 0.5491)

MATN4  (Minke Whale)

Gene Details

matrilin 4

External Links

Gene match (Identifier: BACU015457, Minke Whale)

Protein Percentage 90.09%
cDNA percentage 91.36%
Ka/Ks Ratio 0.34785 (Ka = 0.0694, Ks = 0.1994)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1812 bp    Location:1166889..1158598   Strand:-
>bmy_08784
AAAGTCCTCCCTGATCTCCTCGCAGGTCCCAGGTGCCGTACTGGGCCCCTGGATTTGGTGTTCGTGATTGACAGCTCGCGCAGTGTGCGCCCCTTCGAGTTCCAGACGATGCGGCAGTTCCTGGTGGGCCTCCTCCGCAGCTTGGACGTGGGGCCCAACGCCACGCGCGTCGGCGTGATCCAGTATTCGAGTCAAGTGCAGAGCGTCTTCCCGCTCGGAACCTTCTCACGCCGCGAGGATATGGAGCGCGCCATCCGCGCTCTAGTGCCACTGGCGCAGGGCACCATGACCGGGCTGGCAATCCAGTACACCGTGAACGTGGCCTTCAGTGTGGCCGAGGGCGCGCGCCCGCCGGAGGCGCGCGTGCCTCGCGTCGCTGTCATCGTGACCGACGGGCGGCCCCAGGATCGCGTGGCCGAAGTGGCGGCGCAGGCGCGCGCCCGCGGCATCGAGATCTACGCCGTGGGGGTTCAGCGCGCAGACGTGGCCTCCCTGCGCGCCATGGCGTCTCCCCCGCTGGACGAGCACGTCTTCCTCGTCGAGTCCTTCGACCGTATCCAGGAGTTTGGCCTTCAGTTCCAGCGCCGGCTGTGTCGAAAGGACCTGTGTGCTGAGGGGGGACACGGCTGCCAGCACCAATGTGTCAGCTCCCCCGGCACGTTCCACTGTGCCTGCAACCCCGGCTACCGGCTAGCAGCAGATGACAAGAGCTGTTTGGCCATTGACTACTGCAGCTTTGGGAACCACAGCTGCCAGCATGAGTGTGTTAGCACCTTTGGTGGGCCACGGTGCCGCTGCAGAGGGGGCTACAACTTGCTGCCCGACGGCAGGAGCTGTCAGGCCCAGGACCTTTGCAATGGCGTAGACCATGGATGCGAGTTCCAGTGCGTGAGTGAGGGCTTCTCCTACCGCTGCCTGTGCCCTGAGCGGTGGCAGCTCCAGGCAGATGGCAAGAGCTGCAGCCGGTGCCGGGAAGGCCACGTGGACCTGGTTCTGCTCGTCGATGGCTCCAAGAGCGTGCGTCCGCAGAACTTCGAGCTGGTGAAGCGCTTCGTGAACCAGATCGTGGACTTCCTGGACGTGTCCCCAGAAGGCACGCGCGTGGGGCTGGTGCAGTTCTCCAGCCGCGTGCGCACCGAGTTCCCACTGGGCCGCTACGGCACGGCGGCCGAGGTGAAGCAGGCGGTCCTGGCTGTGGAGTATATGGAGCGCGGCACCATGACCGGGCTTGCGCTGCGCCACATGGTGGAGCACAGCTTTTCAGAGGCGCAGGGCGCGCGGCCCCGGGCGCTCAACGTGCCCCGCGTGGGCCTGGTCTTCACCGACGGCCGCTCCCAGGATGATGTCTCGGTGTGGGCGGCGCGCGCCAAGGAGGAAGGCATCGTCATGTACGCCGTGGGCGTAGGCAAGGCGGTGGAGGAGGAGCTGCGASAGATCGCCTCGGAGCCAGCCGAGCTGCACGTGTCCTACTCCCCCGACTTCAGCACCATGACGCACCTGTTGGAGAACCTCAAAGGCAGCATCTGCCCGGACCTGGCAAAGCGGCAGGACTGGGTGTGTTTCAGAGGAGGGCATCAGCGCGGGGACAGAGCTTCGGAGCCCCTGCGAGTGCGAAAGTCTTGTGGAGTTCCAGGGCCGCACGCTGGAGGCGCTCGAGAGTCTGTCGCAGAATCATATCCTTTGGGTCCCGGGGCACGGGCTGGAGGGGAGAAGGGACCCCCCGCGACCCCCGGCGGCTTCCTTAACCGTTCACTGGCCCAGCTGGCGGCGCGCCTGGAGGATCTGGAGAACCAACTGGCCACCCAGAAGTGA

Related Sequences

bmy_08784T0 Protein

Length: 604 aa      View alignments
>bmy_08784T0
KVLPDLLAGPRCRTGPLDLVFVIDSSRSVRPFEFQTMRQFLVGLLRSLDVGPNATRVGVIQYSSQVQSVFPLGTFSRREDMERAIRALVPLAQGTMTGLAIQYTVNVAFSVAEGARPPEARVPRVAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVASLRAMASPPLDEHVFLVESFDRIQEFGLQFQRRLCRKDLCAEGGHGCQHQCVSSPGTFHCACNPGYRLAADDKSCLAIDYCSFGNHSCQHECVSTFGGPRCRCRGGYNLLPDGRSCQAQDLCNGVDHGCEFQCVSEGFSYRCLCPERWQLQADGKSCSRCREGHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGLALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDVSVWAARAKEEGIVMYAVGVGKAVEEELRZIASEPAELHVSYSPDFSTMTHLLENLKGSICPDLAKRQDWVCFRGGHQRGDRASEPLRVRKSCGVPGPHAGGARESVAESYPLGPGARAGGEKGPPATPGGFLNRSLAQLAARLEDLENQLATQK*