Part of scaffold_405 (Scaffold)

For more information consult the page for scaffold_405 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SFPQ ENSTTRG00000013930 (Bottlenosed dolphin)

Gene Details

splicing factor proline/glutamine-rich

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013207, Bottlenosed dolphin)

Protein Percentage 94.15%
cDNA percentage 94.53%
Ka/Ks Ratio 0.51874 (Ka = 0.0257, Ks = 0.0496)

SFPQ ENSBTAG00000016328 (Cow)

Gene Details

splicing factor, proline- and glutamine-rich

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021719, Cow)

Protein Percentage 96.03%
cDNA percentage 93.71%
Ka/Ks Ratio 0.15951 (Ka = 0.0269, Ks = 0.1686)

SFPQ  (Minke Whale)

Gene Details

splicing factor proline/glutamine-rich

External Links

Gene match (Identifier: BACU009658, Minke Whale)

Protein Percentage 94.63%
cDNA percentage 95.77%
Ka/Ks Ratio 0.72385 (Ka = 0.0407, Ks = 0.0562)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2196 bp    Location:441981..457477   Strand:+
>bmy_08894
ATGTCTCGGGACCGGTTCCGAAGTCGGGGCGGTGGCGGTGGCGGTTTCCACCGACGCGGAGGGGGAGGCGGTCGCGGCGGCCTCCACGACTTCCGCTCCCCGCCACCCGGCATGGGCCTCAATCAGAACCGCGGACCTATGGGGCCCGGCCCGGGCCAGGGTGGCCCCAAGCCTCCGATCCCGCCACCGCCTCCGCACCAGCAACAGCAGCAGCCACCGCCGCAGCAGCCGCCACCACAGCAGCCGCCGCCGCTTCAGCCGCCGCCGCACCAGCCGCCGCATCCGCAGCCGCCGCATCCGCCGCCGCCGCCGCCACAGGACTCATCTAAGCCTGTCGTCCCTCAGGGACCCGGCCCGGCTCCCGGAGTAGGCAGCGCTCCCCCGGCCTCCGGCTCGGCGCCGCCCGTCACACCCCCGACTTCGGGGGCCCCCACGGGGCCAGGCCCCACCCCGACCCCGCCGCCCGCTGTCACCTCGGCGCCCCCCGGGGCGCCCCCGCCCGCGCCGCCGAGCAGCGGGGTCCCCACCACCCCCCCTCAGGCTGGCGGCCCGCCGCCTCCACCCGTGGGGGGCCCGGGCCCCGGGCCTAAGCAGGGCCCAGGGGCCGTCGGCCCTAAAGGCGGCAAAATGCCAGGCGGGCCGAAGCCCGGCGGCGGCCCGGGCCTAAGCACTCCTGGCGGCCACCCCAAGCCGCCGCACCGAGGCGGCGGGGAGCCCCGCGGGGGCCGGCAACACCACACGCCCTACCACCAGCAGCACCACCAAGGGCCGCCGCCCGGCGGGCCCGGGGGCCGCAGCGAGGAGAAGATCTCTGATTCCGAGGGGTTTAAAGCCAACTTGTCTCTCTTGAGGAGGCCTGGAGAGAAAACTTACACACAGCGTTGTCGGTTGTTTGTTGGTAATCTACCTGCTGATATCACGGAGGATGAATTCAAAAGATTATTTGCTAAATATGGAGAACCAGGAGAAGTTTTTATCAACAAAGGCAAAGGATTCGGATTTATTAAGCTTGAATCTAGAGCGTTAGCTGAAATTGCTAAAGCTGAACTTGATGATACACCCATGAGAGGTAGACAGCTTCGGGTTCGATTTGCCACACATGCTGCTGCCCTTTCTGTTCGAAATCTTTCACCTTATGTTTCCAATGAACTGTTGGAAGAAGCCTTTAGTCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGATGATCGTGGAAGATCTACAGGGAAAGGCATTGTTGAATTTGCTTCTAAACCAGCAGCAAGAAAAGCATTTGAAAGATGCAGTGAAGGTGTTTTCTTACTAACAACAACTCCTCGTCCAGTCATTGTGGAACCACTTGAACAGTTAGATGATGAAGATGGTCTTCCTGAAAAACTTGCACAGAAGAATCCAATGTATCAAAAGGAGAGAGAAACCCCTCCTCGTTTTGCCCAGCATGGCACATTTGAGTATGAGTATTCTCAGAGGTGGAAGTCCCTGGATGAAATGGAAAAACAGCAGCGGGAACAAGTTGAAAAAAACATGAAAGATGCAAAGGACAAATTGGAAAGTGAAATGGAAGATGCCTATCATGAGCATCAGGCAAATCTTTTGCGTCAAGATCTGATGAGACGCCAGGAAGAATTAAGACGCATGGAAGAACTTCATAATCAAGAAATGCAGAAACGTAAAGAGATGCAATTAAGGCAAGAGGAGGAACGACGTAGGAGGGAAGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAAATGAGACGCCAAAGAGAGGAAAGTTATAGCCGGATGGGCTACATGGATCCRCTTTGGGAATTCTTTTGTACTCAAGAATGCTTGAGAGAAAGAGACATGAGAATGGGTGGTGGAGGAGCAATGAACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCTCTAGGTGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGAGTTCCACCGGCAACAATGAGTGGTTCCATGATGGGAAGTGACATGCGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGACCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACTCCGGCAGGAACGAGTCCCAAGCCCTATGAACGGCTTTTTCCTTTTGATGTAGCACTAAATCTGGAGAGTTGCTCCTGCTACACAGTAAGAATGATTGATGTTGGCTGA

Related Sequences

bmy_08894T0 Protein

Length: 732 aa      View alignments
>bmy_08894T0
MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQGGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPLQPPPHQPPHPQPPHPPPPPPQDSSKPVVPQGPGPAPGVGSAPPASGSAPPVTPPTSGAPTGPGPTPTPPPAVTSAPPGAPPPAPPSSGVPTTPPQAGGPPPPPVGGPGPGPKQGPGAVGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHTPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDPLWEFFCTQECLRERDMRMGGGGAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGSDMRTERFGQGGAGPVGGQGPRGMGPGTPAGTSPKPYERLFPFDVALNLESCSCYTVRMIDVG*