Part of scaffold_417 (Scaffold)

For more information consult the page for scaffold_417 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000005643 (Bottlenosed dolphin)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005325, Bottlenosed dolphin)

Protein Percentage 96.55%
cDNA percentage 97.21%
Ka/Ks Ratio 0.18087 (Ka = 0.0149, Ks = 0.0824)

USP18 ENSBTAG00000016661 (Cow)

Gene Details

ubl carboxyl-terminal hydrolase 18

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022157, Cow)

Protein Percentage 78.33%
cDNA percentage 83.58%
Ka/Ks Ratio 0.28202 (Ka = 0.1279, Ks = 0.4536)

USP18  (Minke Whale)

Gene Details

ubiquitin specific peptidase 18

External Links

Gene match (Identifier: BACU007533, Minke Whale)

Protein Percentage 93.1%
cDNA percentage 92.78%
Ka/Ks Ratio 0.19505 (Ka = 0.0445, Ks = 0.2282)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 612 bp    Location:32037..14668   Strand:-
>bmy_08972
ATGCGCGTGCGGGAGTCCCTCGTTTGCCTTGGGTGTACCGTGGAGAGTGACAGAAGCAGCAGCATGCTGACTCTGCCCGTCTCTCTTTTCGACGTGGATTCAAAGCCCCTGAAGACACTGGAGGACGCCCTCCGCTGTTTCTTCCAGCCCAGGGAGCTGTCCAGCGCGGACAAGTGCTTCTGTGGGAACTGTGAGAAGAAGACATGCTGGAAGCAGGTCTTGACGCTGACCCACCTGCCCCAGACATTGACCATCCACCTCATGCGTTTCTCCAGCAAAAATCTGCGGACAGAAAAAGTCTGCCACTCTCTGTGTTTCCCCCAGAACTTGGATCTAAATAAGCTCCTTGAGATGGAGGGAGAGCCCTGCGCTGCTGAGGAGCAGCATGGGGGACAGTATGAACTCTTCGCTGTGATTGCCCATGTGGGGAAGGCTGACTTCGGTCACTACTGTGCTTATGTCCGGAGTTCTGTGAATGGAAAATGGTTCTGCTTCAACGACTCCAATGTTTGCTGGGTGTCCTGGGAAGACGTCCAGTGTACCTATGGAGATCACAGCTACCGCTGGCGGGAAACTGCATATCTTCTGGTTTACATGAAGATTGAGTCCTAA

Related Sequences

bmy_08972T0 Protein

Length: 204 aa      View alignments
>bmy_08972T0
MRVRESLVCLGCTVESDRSSSMLTLPVSLFDVDSKPLKTLEDALRCFFQPRELSSADKCFCGNCEKKTCWKQVLTLTHLPQTLTIHLMRFSSKNLRTEKVCHSLCFPQNLDLNKLLEMEGEPCAAEEQHGGQYELFAVIAHVGKADFGHYCAYVRSSVNGKWFCFNDSNVCWVSWEDVQCTYGDHSYRWRETAYLLVYMKIES*