Part of scaffold_428 (Scaffold)

For more information consult the page for scaffold_428 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR1B ENSTTRG00000010988 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) I polypeptide B, 128kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010426, Bottlenosed dolphin)

Protein Percentage 98.09%
cDNA percentage 97.72%
Ka/Ks Ratio 0.12316 (Ka = 0.0079, Ks = 0.0639)

POLR1B ENSBTAG00000014166 (Cow)

Gene Details

DNA-directed RNA polymerase I subunit RPA2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018830, Cow)

Protein Percentage 95.98%
cDNA percentage 91.97%
Ka/Ks Ratio 0.06149 (Ka = 0.0185, Ks = 0.3015)

POLR1B  (Minke Whale)

Gene Details

polymerase (RNA) I polypeptide B, 128kDa

External Links

Gene match (Identifier: BACU017751, Minke Whale)

Protein Percentage 98.9%
cDNA percentage 98.69%
Ka/Ks Ratio 0.13151 (Ka = 0.0043, Ks = 0.0324)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2991 bp    Location:401235..428008   Strand:+
>bmy_09024
ATGGATCCCGGCGGCCGGTGGCGGCAGCTACCCAGCGGGCCCAGCCTAAAGCACTTGACCGACCCCTCTTACGGGATCCCGCGGGAGCAGCAAAAGCCAGCGTTGCAGGAGCTGACGCGGGCGCATGTCGAGTCCTTCAACTACGCTGTGCGCGAGGGGCTCAGCCACGCGGTGCAGGCCATTCCTCCCTTTGAATTTGCTTTCAAAGATGAGCGGATCTCTCTTACTATTGTGGATGCTGTCATCAGTCCACCCACAGTTCCAAAAGGGAGCATCTGTAAAGAGCTCAATGTTTATCCAGCAGAATGCCGGGGCCGAAGGAGCACCTACCGGGGAAGGCTGACAGCACTTGTCAGCTTTTCCGATTATCAGATTTTTCAGGAGCTCATCAAAGGAAAGGAAGATGACTCTTTCTTTAGGAACTCTGTTTCTCAGATGTTAAGGATTGTAATGGAAGAGGGATGTTCCACACAAAAACAGGTCCTTAGCTATCTGGGTGAACGCTTCAGAGTAAAACTCAGTCTTCCTGACTGGTACCCAAATGAACACGCTGCAGAGTTTCTCTTCAGCCAGTGCATCTGCATCCACTTGAAATCCAACACTGAAAAGTTTTATGTGCTTTGTCTCATGACCCGGAAGCTCTTTGCTTTAGCCAAAGGAGAGTGCATGGAGGAGAATCCTGACAGTTTAGTGAATCAAGAGGTCCTGACCCCCGGGCAGCTCTTCCTCATGTTTCTGAAGGAAAAATTGGAAGCTTGGTTAGTATCTATTAAAATAGCTATAGACAAGAAGGCTCAGAAGACCAATGTGWCCTTAAACACTGAAAATTTGATGAAGATTTTTAGTCTGGGAACAGACCTTACAAAACCATTTGAATATCTTCTTGCTACTGGGAATCTACGTTCTAAAACAGGTCTTGGCTTCCTGCAAGATTCCGGACTTTGTGTTGTGGCTGACAAGCTGAACTTCATACGCTATCTCTCCCATTTCCGCTGTGTGCACAGAGGGGCAGATTTTGCCAAGATGCGGACCACCACAGTACGCAGGCTGCTGCCGGAGTCCTGGGGTTTCCTTTGCCCTGTGCACACCCCCGACGGGGAGCCCTGTGGTCTGATGAACCACTTAACCGCCATATGTGAGGTCGTCACACAGTTTGTGTATACAGCATCTATTCCAGCTTTGCTCTGCAACTTGGGCGTCACTCCAGTTGATGGAGCTCCACAGAGGCCGTACAGCGAGTGCTACCCTGTCCTGCTGGACGGTGTCATGGTTGGCTGGGTGGATAAGGAGCTTGTTCCTGGCATTGCCGATTCTCTCCGACATTTTAAGGTTTTGAGAGAAAAAAGAATTCCTCCGTGGATGGAGGTGGTCCTGATCCCAATGACAGGAAAACCAAGTCTGTACCCAGGATTGTACCTTTTTACCACTCCTTGTAGACTGGTGCGGCCTGTGCAGAACTTGGAATTGGGCAAAGAAGAACTAATTGGAACTATGGAACAGATCTTCATGAACGTTGCTGTCTTTGAGGAAGAGGTTTTGGCTGGAGTTACCACCCACCAGGAGCTCTTCCCTCACAGCCTGCTGAGTGTGATCGCCAGCTTCATCCCTTTCTCTGATCACAACCAGAGTCCGAGAAACATGTACCAGTGCCAGATGGGTAAGCAGACTATGGGCTTTCCACTCCTCACTTTTCAAGACCGGTCAGATAATAAACTGTATCGTCTTCAGACTCCACAGAGCCCTTTAGTGAGACCATACATGTATGATTATTATGACATGGATAACTATCCAATTGGGACAAATGCCATTGTTGCTGTTATTTCTTACACTGGCTATGATATGGAAGATGCCATGATTGTGAATAAGGCCTCTTGGGAACGAGGCTTTGCCCATGGAAGTGTCTACAAGTCCGAGTGTATAGATCTGTCTGAAAAAATCAAACAAGGAGATGATAGTCTGGTGTTTGGAGTCAAACCTGGTGACCCACGGATTCTGCAGAAGTTGGATGATGACGGATTGCCATTTATTGGAGCACAGCTGCAGTATGGAGATCCATATTACAGCTACCTGAACCTCAACACCGGGGAAAGCTTTGTGATGTACTATAAGAGTAAAGAAAATTGTATTGTGGATAACATCAAAGTGTGCAGTAATGACACTGGAAATGGCAAATTCAAGTGTGTTTGCATCACGATGAGAGTCCCTCGGAACCCAACTATCGGGGATAAATTTGCCAGTCGTCATGGGCARAAGGGCATCTTGAGCASACTGTGGCCAGTTGAGGACATGCCATTCACTGAGAGCGGGATGGTTCCGGACATTCTGTTCAATCCTCACGGTTTTCCATCTCGCATGACCATCGGTATGTTGATTGAGAGTATGGCAGGGAAGTCTGCAGCTCTACATGGTCTCTGCCATGATGCTACGCCCTTCATCTTCTCAGAGGAGAACTCGGCCCTGGARTACTTTGGTGAGATGTTGAAGGCTGCTGGCTACAACTACTATGGCACTGAGAGGTTGTATAGTGGCATCAGTGGGCTAGAGCTGGATGCAGACATCTTCATAGGTGTGGTTTATTACCAACGCTTACGCCACATGGTCTCAGACAAATTCCAAGTTAGGACAACAGGAGCCAGAGACAAAGTCACTAACCAGCCTATCGGCGGAAGAAATGTCCAGGGTGGAATCCGTTTTGGGGAGATGGAGCGGGACGCTCTTTTAGCTCATGGTACGTCTTTTCTCCTTCACGACCGGCTCTTCAACTGCTCGGATCGGTCGGTAGCCCACGTGTGTGTGAAGTGTGGTAGTTTGCTCTCCCCGCTGTTGGAGAAGCCACCCCCATCGTGGTCCACCATGCGCAACAGGAAGTACAACTGTACTCTGTGTAATCGCAGTGACACCATCGACACTGTGTCTGTGCCTTACGTCTTTCGGTATTTTGTAGCTGAACTGGCAGCTATGAACATCAAAGTGAAACTGGATATCGTTTAA

Related Sequences

bmy_09024T0 Protein

Length: 997 aa      View alignments
>bmy_09024T0
MDPGGRWRQLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICKELNVYPAECRGRRSTYRGRLTALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLSYLGERFRVKLSLPDWYPNEHAAEFLFSQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTNVXLNTENLMKIFSLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQFVYTASIPALLCNLGVTPVDGAPQRPYSECYPVLLDGVMVGWVDKELVPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAVFEEEVLAGVTTHQELFPHSLLSVIASFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSECIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSXLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELDADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSTMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDIV*