Part of scaffold_428 (Scaffold)

For more information consult the page for scaffold_428 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IL1A ENSTTRG00000011060 (Bottlenosed dolphin)

Gene Details

interleukin 1, alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010482, Bottlenosed dolphin)

Protein Percentage 78.41%
cDNA percentage 89.52%
Ka/Ks Ratio 2.6198 (Ka = 0.1428, Ks = 0.0545)

IL1A ENSBTAG00000010349 (Cow)

Gene Details

Interleukin-1 alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013665, Cow)

Protein Percentage 79.1%
cDNA percentage 88.81%
Ka/Ks Ratio 1.00239 (Ka = 0.1248, Ks = 0.1245)

IL1A  (Minke Whale)

Gene Details

interleukin 1, alpha

External Links

Gene match (Identifier: BACU017756, Minke Whale)

Protein Percentage 93.7%
cDNA percentage 97.53%
Ka/Ks Ratio 3.64398 (Ka = 0.0331, Ks = 0.0091)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 843 bp    Location:630391..620773   Strand:-
>bmy_09027
ATGGCCAAAGTCCCTGACCTCTTTGAAGACCTGAAGAACTGTTACAGTGAAAATGAAGAATACAGTTCTGAAATTGACCATCTGTCTCTGAATCAGCCTCTCAGTTTCCATTTTCCTTCCTCACAGAAGTCCTTCTATGATGCAAGCTATGAACCACTTCATGAGGACTGCATGGATAAATTTATATCTCTGAATACCTCTGAAACCTCTAAGACATCCAAGCTTACCTTCAAGGAAAATGTGGCGATGGTGTCAGCCAACGGGAAGATTCTGAAGAAGAGACGGTTGAGTTTAAATCAGTTCATCACCAATGATGACCTGGAAGACATTACTAAGGATACAGAAGAAGAAATCATCAAGCCCAGATCAGCACATTCCAGCTTCCAGAGCAACATGAAATACAACTTTGTGAGGGTCATCAGACAACAATGCATTCTGAATGACGCCCTCCATCAAAGTATAGTTCAAGATTCGTCGGGTCAATACCTCACGGCTGCTGCATTAAATAATCCGGATGAGGCAGTGAAATTTGACATGTGTGCTTATATACCAGAAGAGGATCATCAATGTCCTGTGACTCTAAGAATCTCAGAAACTCTACTGTTTGTGTGTGCTCAAAACGAAGACGAACCCATATTGCTAAAGGAGATGCCTGAGATACCCAAAACCATCGAAGATGAGACCAATCTCCTCTTCTTCTTGGAAGAGCATGGCACTATGTGCTACTTCAAATCAGTTGCCAATTCAGAGTTGTATTTGGCCACAAAGCAAGAAAAACTGGTGCACCTGGCAAGGGGCCTGCCCTCTATCACTGACTTTCAGATGTCGGAAAACCAGCCTTGA

Related Sequences

bmy_09027T0 Protein

Length: 281 aa      View alignments
>bmy_09027T0
MAKVPDLFEDLKNCYSENEEYSSEIDHLSLNQPLSFHFPSSQKSFYDASYEPLHEDCMDKFISLNTSETSKTSKLTFKENVAMVSANGKILKKRRLSLNQFITNDDLEDITKDTEEEIIKPRSAHSSFQSNMKYNFVRVIRQQCILNDALHQSIVQDSSGQYLTAAALNNPDEAVKFDMCAYIPEEDHQCPVTLRISETLLFVCAQNEDEPILLKEMPEIPKTIEDETNLLFFLEEHGTMCYFKSVANSELYLATKQEKLVHLARGLPSITDFQMSENQP*