Part of scaffold_418 (Scaffold)

For more information consult the page for scaffold_418 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ACAN ENSTTRG00000005757 (Bottlenosed dolphin)

Gene Details

aggrecan

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005441, Bottlenosed dolphin)

Protein Percentage 94.63%
cDNA percentage 96.33%
Ka/Ks Ratio 0.53221 (Ka = 0.0307, Ks = 0.0577)

BT.92700 ENSBTAG00000016158 (Cow)

Gene Details

aggrecan core protein precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021512, Cow)

Protein Percentage 90.75%
cDNA percentage 92.22%
Ka/Ks Ratio 0.28181 (Ka = 0.0497, Ks = 0.1764)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 6099 bp    Location:110790..74964   Strand:-
>bmy_09050
ATGACCACTTTACTCTTCGTGTTTGTGACTCTGAGAGTCATCGCGGCAGCCATCTCAGTAGAAGTTTCAGACCCTGACAACTCGCTGAGTGTCAGCATCCCTGAACCGTCCCCGCTGCGGGTCCCCCTGGGGAGCTCCCTCACCATCCCCTGCTACTTCATCGACCCCATGCACCCCGTGACCACCGCCCCCTCCACCGCCCCCCTCGCCCCAAGAATCAAGTGGAGCTGCATTTCCAAGGAGAAGGAGCTGGTGCTGCTGGTGGCGACTGAAGGGCAGGTGCGGGTTAACAGTGCCTACCAAGACAGGGTCACGCTACCCAACTACCCGGCCATCCCCAGCGACGCCACCCTGGAAATCCAGAACCTGAGCTCCAATGACTCTGGGATCTATCGCTGCGAGGTGATACACGGCATCGAGGACAGCGAGGCCACCCTGGAGGTCGTGGTGAAAGGCATCGTGTTCCATTACAGAGCCATCTCCACACGCTACACCCTGGACTTCGACAGGGCTCAGCGGGCCTGCCTGCAGAACAGCGCCATCATCGCCACGCCCGAGCAGCTGCAGGCCGCCTATGAGGACGGCTTCCACCAGTGCGACGCCGGCTGGCTGGCAGACCAGACTGTCAGGTACCCCATCCACACTCCAAGGGAAGGCTGCTATGGGGACAAGGATGAGTTTCCCGGCGTAAGAACCTACGGCATCCGTGATACCAATGAAACCTATGACGTGTACTGCTTCGCAGAGGAGATGGAGGGCGAGGTCTTTTATGCAACATCCCCGGAGAGGTTCACCTTCCAGGAGGCAGCCAATGAGTGCCGGCGTCTGGGCGCCCGGCTGGCCACCACGGGCCAGCTCTACCTGGCCTGGCAGAGTGGCATGGACATGTGCAGCGCCGGCTGGCTGGCCGACCGCAGCGTGCGCTACCCCATCTCCAAGGCCCGGCCCAACTGCGGGGGCAACCTCTTGGGCGTGAGGACTGTCTACCTGCACGCCAACCAGACGGGATACCCCGACCCCTCATCCCGCTACGACGCCATCTGCTACACAGGTGAAGACTTTGTGGACATCCCAGAAAATTTCTTCGGGGTGGGTGGTGAGGAAGACATCACCATCCAGACGGTGACCTGGCCTGATGTGGAGCTGCCCTTGCCCCGAAACATCACCGAGGGTGAAGCCCGAGGCAGCGTGATCCTCACGGTGAAACCCGTCTTTGACATCACCCCTACCGTCCTGGAGCCCGAGGAGCCCTTCACTTTTGCCCCCGAAGTAGGGGCCACCGCCTTCTCTGAGGCCGAGAACAGGACTGAAGAGGCTACCCGGCCCTGGGCCTTTCCCGAGGAGTCCACATCTGGCCTGGGCGCTCCGACAGCCTTCACCAGCGAGGACCTCGTCGTGCAGGTGACCGCAGCCCCAGGTGCAACCGAGGTCCCTGGGCAGCCACGACTGCCAGGGGGAGTTGTGTTCCACTACCGCCCGGGCTCCTCCCGCTACTCACTGACCTTTGAGGAGGCCCAGCAGGCCTGCCTGAGCACCGGGGCCGTCATCGCCTCACCCAAACAGCTCCAGGCCGCCTATGAAGCAGGCTACGAGCAGTGTGACGCCGGCTGGCTGCAGGACCAGACCGTCAGATACCCCATTGTGAGCCCACGGACCCCGTGTGTGGGTGACAAGGACAGCAGCCCGGGGGTCCGGACCTATGGCGTGCGACCACCATCAGAAACCTACGATGTCTACTGCTACGTGGACAGACTCGATGGGGAGGTGTTCTTCGCCACACGTCTGGAGCAGTTCACCTTCCAGGAAGCACAGGAGTTCTGTGAATCCCAAAACGCCACACTGGCCACCACGGGCCAGCTCTATGCTGCCTGGAGCCACGGCCTGGACAAGTGCTACGCTGGCTGGCTATCTGACGGCAGCCTCCGCTACCCCATCGTCACCCCAAGGCCTGCCTGCGGCGGGGACAAGCCAGGTGTGAGAACCATCTATCTCTACCCCAACCAGACAGGCCTCCTGGACCCGATGTCACGACACCACGCCTTCTGCTTCCGAGGCGTCTCGGCGGCGCCCTCTCCAGGAGAAGAGGAGGGTAGCGCACCCACAGAGCTCCCTGAGGTGGAAGACTGGATCACTGCTGAAGTGGGGCCCAGCGTGGCTGCTGTCCCTGTTGGGGAGGAGACGACTGCAATCCCAGACTTCACCACTGAGCCAGAAAACCAGACGGAATGGGAGCCCGCCTACACGCCAGCGGGCACTTCCCCACTGCCAGAGATCCCTCCTACGTGGCTTCCCACTAGCGCAGCAACAGAGGAGAGCACAGAAGGCCCTTCTGCAACGGAAGTGCCCTCAGCCTCGGAGGAGCCATTGCCCTCAGAAAAGCCGTTGCCCTCAGAAGAACCATTCCCCTCAGAGGAGCCATTCCCCTCAGAGGAGCCATCCACACTTACAGCTCCAGTGCCCAGCAGGACTGAGCTGCCAGGCTCTGGGGAGGTATCTGGGGTGCCTGAAGTCAGTGGTGACTTCACAGGCAGTGGAGAAATTTCAGGACACCTGGACTCCAGTGGGCAGCCCTCCGGGGAAATTGCAAGTGGACTGCCCTCTGAAGACCTTGACTTCAGTGGGCTCACCTCTACAGTGGGCTCAGGCCTGCCTGTGGAAAGCGGACTGGCTTCAGGAGATGAAGATAGAATTACGTGGACCAGCACTCCTGAAGTTGACAGGTTGCCCTCTGGAGGTGAGGTCCCAGAGGGTTCTGTCTCTGGAATAGGGGACCTCAGTGGACTGCCTTCTGGAGAAGGTCCAGAAGTCTCTGCCTCTGGAGTAGGGGACCTCAGTGGACTTCCTTCTGGAAGAGAGGACCTAGAGACCTCTGTCTCTGGAGTAGAGGACCTCAGTGGACTTCCTTCTGGAGAAGGTCCAGAAGTCTCTGCCTCTGGAGTAGGGGACCTCAGTGGACTTCCTTCTGGAGGAGAGGACCTCAGTGGACTTCCTTCTGGAGAAGGTCCAGAAGCCTCTGCCTCTGGAGTAGGGGACATCAGTGGACTTCCTTCTGGAGGAGAGGGTCTAGAGACCTCTGTCTCTGGAGTAGAGGACCTCAGTGGACTTCCTTCTGTAGGTGAGGATCATCTAGAGACCTCTGCTTCTGGAGTAGGGGACCTTAGTGGACTTCCTTCTGGAAGGGAAAGTCTGGAGATCTCTGCTTCTGGAGCAGAGGATCTTAGTGGGTTGACTTCTGGAAAAGAAGACTTGATTGGGTCAGCTTCTGGAGTCTTGGACCTTGGCAGAATACCTTCTGGAACTCTAGGAAGTGGGCAAGCTCCAGAAGCAAGTGGCCTTCCCTCTGGATTTAGTGGTGAGTATTCTGGGGTGGACCTTGGAAGTGGCCCATCTTCTGGCCTTCCTGACTTCAGTGGACTTCCATCTGGGTTCCCAACTGTCTCCCTAGTGGATACTACATTGGTGGAAGTGGTCACAGCCACCACTGCAGGTGAACTAGAAGGAAGGGGAACCATTGGCATCAGTGGTGCTGGAGAAACATCTGGGCTGCCCTTCAGTGAGTTGGACATTAGTGGAGGAGCAAGCGGACTCTCTTCAGGAGCTGAACTCAGTGGCCAGGCATCTGGGTCTCCTGACATCAGTGGGGAAACATCTGGACTCTTTGGTGTCAGTGGACAGCCATCAGGGTTTCCTGACATTAGTGGGGGAACATCTGGACTTTTTGAGGTCAGTGGGCAGCCATCAGGGTTTTCTGGGGAAACATCTGGTGTGACTGAGCTTAGTGGACTGTCCTCCGGACAACCAGAAATCAGTGGAGAAGCTTCTGGAGTTCTTTCTGGCATTGGTCCACCATTTGGCATAACCGACCTGAGTGGAGAAACGTCCGGGATCCCTGATCTCAGTGGGCAGCCATCGGGGTTACCAGGGTTCAGTGGGACAACATCCAGAATCCCTGACCTGGTTTCCAGTGCCGTGAGTGGTAGTGGTGAATCTTCTGGCATTACATTCGTGGACACCAGTTTGGTTGAAGTGACCCCAACTACATTTAAAGAAGAAGAAGGTTTAGGGTCCGTGGAACTCAGTGGTCTCCCTTCAGGAGAGGCAGATCTCTCAGGCACATCTGGGATAGTGGATGTCAGTGGACTATCTTCTGGAGTAATTGACTCCAGTGGGTTTACACCCCAGCCTCCAGAATTCAGTGGCCTGCCAAGCAGAGTAGCTGAGGTCAGTGGAGAGTCCTCTGGAGCTGAGAGTGGGAGCAGCCTGCCCTCCGGAGAATATGACGGCCGTGGACTTCCATCTGGTTTCTCCACTGTCTCTCTTGTAGACAGAACTTTGGTGGAATCTGTAACCCAGGCTCCAACAGCCCAAGAAGCAGGAGAAGGGCCTTCGGGCATTTTGGAATTTAGTGGTGCCCCTTCTGGAGCACCAGACATGTCTGGAGACCATTCAGGACTTTTGGACCTAAGTGGACTTCAGTCTGGACTGGTAGAGCCCAGTGGAGAGCCATCCAGTACTCCATATTTTAGTGGGGACTTTTCTGGCACCACTGATGTAAGCGGAGAATCCTCTGCACCCACGAGCACCAGTGGGGAGGCCTCAGGACTTCCAGAAGTTACTTTAATCACTTCTGAGTTTGTGGAGGGTGTTACTGAACCAACTGTTTCCCAGGAACTGGGCCAAAGACCCCCTGTAACATACACCCCCCAGCGTTTTGAGTCCAGTGGAGAAGCCTCTGCATCTGGGGATGCACCAAGGTTCCCCGAGTCTGGGGTAGAAGCATCATCAGTCCCAGAATCTAGCAGCGAGACGTCTGCCTATCCTGAGGCTGAGGTGGGAGCATCTGCTGCCCCCGAGGCCAGCGGAGGCACTTCCAGGTCCCCTGATCTGAGTGAAACCACCTCCGCCTTCCATGAAGCTGATCTGGAGGGAGCCTCAGGCCTGGGAGTGAGAGGTAGCACCTCAGCCTTTCAGGAAGACCCCAGGGAGGGCTCGGCTGCCCCGGAAGTGAGTGGAGAGTCAACCACCACCTATGATGTGGGCACAGAGGCATCAGGTTCACCTTCGGCTACTCCCGTGGCTTCTGGAGACAGGACTGAAATCAGCAGAGACCTGTCTGTTCACACCTCGGGGTTGGATGTTGTCATCAGAACCACCATCCCGGAATCCAAGTGGACTCAGCAGACCCAGAGCCCTGCAGAGGCGCATCCAGAAATCGAGTCCTCAAGCCCCGTGCACTCAGGAGAAGAGAACCAAACAGCTGAAATACCCACCTCCCCAACTGATGCTTCCATCCCAACCTCTCCAGGAGGGACAGATGAATCAGAGGCAACCATGGCAGACATTGACGAGTGCCTCTCAAGCCCTTGTCTGAATGGAGCCACCTGCGTGGACGCCATCGACTCTTTCACATGCTTATGCCTTCCCAGCTACCAAGGGGACCTGTGTGAGATCGACCAGAAGCTGTGTGAGAAGGGCTGGACCAAGTTCCAGGGCCACTGTTACCGCCACTTCCCTGACCGGGCAACCTGGGTGGATGCCGAGGGCCAGTGCCGGAAGCAGCAGTCCCACCTGAGCAGCATCGTCACCCCCGAGGAGCAGGAGTTTGTCAACAACAATGCTCAGGACTATCAGTGGATCGGCCTGAATGACAAGACCATCGAAGGAGACTTCCGCTGGTCAGATGGACACTCCTTGCAATTTGAGAACTGGCGCCCCAACCAGCCTGACAACTTCTTTGCCACTGGGGAGGACTGCGTGGTGATGATCTGGCATGAGAAGGGCGAGTGGAATGACGTTCCCTGCAATTACCAGCTGCCCTTCACGTGTAAAAAGGGCACAGTGGCCTGCGGAGAGCCCCCCGTGGTGGAGCACGCCAGGATCTTCGGGCAGAAGAAGGACCGGTACGAGATCAATTCCCTGGTGCGGTACCAGTGCACCGAGGGCTTTGTCCAGCGCCATGTGCCCACCATCCGGTGCCAGCCCAGCGGGCACTGGGAGGAGCCTCGGATCACCTGCACAGACCCCTCCACCTACAAGCGCAGACTACAGAAGCGGAGCTCACGGCCCCTGCGGAGGAGCCGCCCCAGCACGGCCCACTGA

Related Sequences

bmy_09050T0 Protein

Length: 2033 aa      View alignments
>bmy_09050T0
MTTLLFVFVTLRVIAAAISVEVSDPDNSLSVSIPEPSPLRVPLGSSLTIPCYFIDPMHPVTTAPSTAPLAPRIKWSCISKEKELVLLVATEGQVRVNSAYQDRVTLPNYPAIPSDATLEIQNLSSNDSGIYRCEVIHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPIHTPREGCYGDKDEFPGVRTYGIRDTNETYDVYCFAEEMEGEVFYATSPERFTFQEAANECRRLGARLATTGQLYLAWQSGMDMCSAGWLADRSVRYPISKARPNCGGNLLGVRTVYLHANQTGYPDPSSRYDAICYTGEDFVDIPENFFGVGGEEDITIQTVTWPDVELPLPRNITEGEARGSVILTVKPVFDITPTVLEPEEPFTFAPEVGATAFSEAENRTEEATRPWAFPEESTSGLGAPTAFTSEDLVVQVTAAPGATEVPGQPRLPGGVVFHYRPGSSRYSLTFEEAQQACLSTGAVIASPKQLQAAYEAGYEQCDAGWLQDQTVRYPIVSPRTPCVGDKDSSPGVRTYGVRPPSETYDVYCYVDRLDGEVFFATRLEQFTFQEAQEFCESQNATLATTGQLYAAWSHGLDKCYAGWLSDGSLRYPIVTPRPACGGDKPGVRTIYLYPNQTGLLDPMSRHHAFCFRGVSAAPSPGEEEGSAPTELPEVEDWITAEVGPSVAAVPVGEETTAIPDFTTEPENQTEWEPAYTPAGTSPLPEIPPTWLPTSAATEESTEGPSATEVPSASEEPLPSEKPLPSEEPFPSEEPFPSEEPSTLTAPVPSRTELPGSGEVSGVPEVSGDFTGSGEISGHLDSSGQPSGEIASGLPSEDLDFSGLTSTVGSGLPVESGLASGDEDRITWTSTPEVDRLPSGGEVPEGSVSGIGDLSGLPSGEGPEVSASGVGDLSGLPSGREDLETSVSGVEDLSGLPSGEGPEVSASGVGDLSGLPSGGEDLSGLPSGEGPEASASGVGDISGLPSGGEGLETSVSGVEDLSGLPSVGEDHLETSASGVGDLSGLPSGRESLEISASGAEDLSGLTSGKEDLIGSASGVLDLGRIPSGTLGSGQAPEASGLPSGFSGEYSGVDLGSGPSSGLPDFSGLPSGFPTVSLVDTTLVEVVTATTAGELEGRGTIGISGAGETSGLPFSELDISGGASGLSSGAELSGQASGSPDISGETSGLFGVSGQPSGFPDISGGTSGLFEVSGQPSGFSGETSGVTELSGLSSGQPEISGEASGVLSGIGPPFGITDLSGETSGIPDLSGQPSGLPGFSGTTSRIPDLVSSAVSGSGESSGITFVDTSLVEVTPTTFKEEEGLGSVELSGLPSGEADLSGTSGIVDVSGLSSGVIDSSGFTPQPPEFSGLPSRVAEVSGESSGAESGSSLPSGEYDGRGLPSGFSTVSLVDRTLVESVTQAPTAQEAGEGPSGILEFSGAPSGAPDMSGDHSGLLDLSGLQSGLVEPSGEPSSTPYFSGDFSGTTDVSGESSAPTSTSGEASGLPEVTLITSEFVEGVTEPTVSQELGQRPPVTYTPQRFESSGEASASGDAPRFPESGVEASSVPESSSETSAYPEAEVGASAAPEASGGTSRSPDLSETTSAFHEADLEGASGLGVRGSTSAFQEDPREGSAAPEVSGESTTTYDVGTEASGSPSATPVASGDRTEISRDLSVHTSGLDVVIRTTIPESKWTQQTQSPAEAHPEIESSSPVHSGEENQTAEIPTSPTDASIPTSPGGTDESEATMADIDECLSSPCLNGATCVDAIDSFTCLCLPSYQGDLCEIDQKLCEKGWTKFQGHCYRHFPDRATWVDAEGQCRKQQSHLSSIVTPEEQEFVNNNAQDYQWIGLNDKTIEGDFRWSDGHSLQFENWRPNQPDNFFATGEDCVVMIWHEKGEWNDVPCNYQLPFTCKKGTVACGEPPVVEHARIFGQKKDRYEINSLVRYQCTEGFVQRHVPTIRCQPSGHWEEPRITCTDPSTYKRRLQKRSSRPLRRSRPSTAH*