Sequence detailsbmy_09106 (Coding sequence)

Part of scaffold_427 (SequenceType object (1))

For more information consult the page for scaffold_427 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ITGA6ENSTTRG00000011633 (Bottlenosed dolphin)

Gene Details

integrin, alpha 6

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000011040, Bottlenosed dolphin)

Protein Percentage 95.38%
cDNA percentage 96.0%
Ka/Ks Ratio 0.33898 (Ka = 0.0289, Ks = 0.0853)

BT.102259ENSBTAG00000017266 (Cow)

Gene Details

integrin alpha-6 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000022960, Cow)

Protein Percentage 92.0%
cDNA percentage 91.51%
Ka/Ks Ratio 0.2243 (Ka = 0.0507, Ks = 0.2261)

ITGA6 (Minke Whale)

Gene Details

integrin, alpha 6

External Links

Gene match (Identifier: BACU010132, Minke Whale)

Protein Percentage 98.24%
cDNA percentage 98.34%
Ka/Ks Ratio 0.27971 (Ka = 0.0106, Ks = 0.0377)

Additional orthologs identified in other species via the OPTIC pipeline.

ITGA6 (Human)   Itga6 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3249 bp    Location:1123266..1164153   Strand:+
Raw sequence 
>bmy_09106
ATGGAACAATCTCCGCAGCTTTTTCAACAACAGGAAACCCGGAAGCACCTGTCCCCTGCTGGGGACAAACGGTCGGCGGAAGCCAGGGGCTCTGAGGCGCTGCGCAGGTTGCTCGTGGGGGCCCCACGGGCAGTGGCCCTTCCGCTGCAGAAGGCCAACAGAACAGGAGGCTTGTACAGCTGCGACATCACCTCCCGGGGGCCGTGCCCACGGATTGAATTTGATAACGACGGAAGATATAAAACATGTGCTCATCGATACGAAAAAAGGCAGCATGTTAATACAAAACAGGAATCCCGAGACATTTTTGGAAGGTGTTACGTCCTAAGTCAGAATCTCAGGATTGAAGATGATATGGATGGAGGAGACTGGAGTTTTTGTGATGGCCGATTAAGAGGTCATGAAAAATTTGGTTCTTGCCAGCAAGGTGTAGCAGCTACTTTTACTAAAGACTTTCATTACATTGCGTTTGGAGCCCCAGGCACTTACAACTGGAAAGGGATTGTTCGCGTAGAGCAAAAGAATAACACTTTTTTTGACATGAACATCTTTGAAGATGGGCCTTATGAAGTTGGTGGAGAGACTGACCATGATGAAAGTCTAGTTCCTGTTCCTGCTAACAGTTATTTAGGCCTGCTGTTTTTGACCAGCATTTCCTATACAGATCCCGATCAGTTTGTTTATAAAACACAGCCTCCCAGGGAGCAGCCCGACACATCCCCTGATGTGATGATGAATAGCTACCTAGGGTTTTCTTTGGACTCAGGGAAGGGTATTGTTTCCAAAGATGAGATCACTTTTGTATCTGGTGCTCCTAGAGCCAATCACAGTGGAGCTGTGGTTTTGCTTAAAAGAGACGTGAAGTCTGCGCACCTTCTCCCGGAGCACATATTTGATGGGGAAGGGCTGGCTTCTTCATTTGGCTATGACGTGGCAGTGGTGGACCTTAACAAAGATGGGTGGCAAGATATAGTTATTGGAGCCCCACAGTATTTTGATAGAAGTGGAGAAGTTGGAGGTGCAGCGTATGTCTACATTAACCAGCAAGGCAGATGGAATAACGTCAAGCCAATTCGTCTTAATGGAACCAAAGATTCTATGTTTGGCATTGCGGTCAAAAATATCGGCGATATTAATCAAGATGGCTACCCAGATATTGCAGTTGGAGCACCTTACGATGGTATGGGGAAGGTTTTTATCTATCACGGATCTGCGAACGGAATAAATACCAAACCCACACAGATTCTCGAGGGTAAATCACCTTTTTTTGGATATTCAATTGCCGGAAACATGGACCTTGATAGAAATTCCTACCCCGATGTTGCTGTTGGTTCCCTCTCAGATTCAGTAACTATTTTCAGATCCCGGCCTGTGATTAATATTCAGCAAACCATCACAGTTACACCTAACAGAATTGATCTCCATCAGAAAATGCCCTGCGGGGCGCCTAGCGGGATATGCCTGAAGGTTAAGGCCTGTTTTGAATATACTGCCAAACCCACTGGTTACAATCCTTCAATAACCATTGCGGGCACACTGGAGGCTGAAAAGGAAAGAAGAAAATCTGGGCTGTCATCAAGAGTTCAGTTTCGAAACCAAGGTTCTGAGCCCAAGTATACGCAAGAGCTCACTCTAAGCAGGCAGAAGCAGAAGGCGTGCATGGAGGAAACCCTCTGGCTCCAGGAAAATATCAGAGATAAACTGCGTCCCATCCCCATAACAGCTTCCGTAGAGATCCAAGAGCCAAGCACTCGGAGGCGAGTGAATTCGCTTCCAGAAGTTCTTCCAATTCTGAACTCAAACGAACCCAAGTCTGTTCATACAGATGTGCACTTCTTAAAAGAGGGATGTGGAGAAGACAACGTATGTAACAGCAACCTTAAGCTAGAATATAAATTTTGTACCCGAGAAGGAAATCAAGACAAATTTTCTTATTTACCAATTCAAAAAGGTGTACCAGAACTAGTTCTAAAAGATCAGAAGGACATTGCTTTAGAAATAACGGTGACGAACAGCCCTTCCAACCCAAAGAATCCCACCAAAGATGGTGATGACGCTCATGAAGCTAAACTCATTGCCACTTTTCCGGACACTTTGACTTATTCTGCATATAGAGAACTGAGGGCTTTCCCTGAGAAACAGTTGAGTTGTGTTGCAAACCAGAACGGCTCACAAGCAGACTGTGAGCTTGGGAATCCTTTTAAAAGAAATTCCAGTGTTACTTTTTATTTAATTTTAAGTACAACTGAGATCACCTTTGACACCACAGATCTGGATGTTAATCTGAAGTTGGAAACAACAAGCAATCAAGATAATTTGGCTTCAATTACAGCTACAGCAAGAGTGGTTATTGAACTGCTTTTATCGGTCTCCGGAGTTGCTAAACCTTCCCAGGTGTATTTTGGAGGTACAGTCATTGGTGAGCAAGCTATGAAATCTGAAGAGGAAGTGGGAAGTTTAATTGAGTATGAGTTCAGGGTGATTAACTTGGGCAAACCTCTTAAAAACCTCGGCACAGCAACCTTGAATATCCAGTGGCCAAAAGAAATTAGCAATGGCAAATGGTTGCTTTATTTGGTGAAAGTAGAATCCAAAGGATTGGAAAAGATAGCTTGTCAGCCACAAAAAGAAATAAACTTCCTGAAACTAAAGGAGGCTCACAACTCAAGAAAGAAACGAGAAATTGCTGAAAGACAGACAGACGATGGTAGAAAATTTTCTTTATTTGCCGAAAGAAAATACCAGACCCTCAACTGCAGCGTGAACGTGAACTGTGTGAACATCGGGTGCCCGCTCCGAGGGCTGGATAGCAAGGCCTCCGTGGTTCTGCGCTCGAGGCTCTGGAACAGCACGTTTCTGGAGGAGTACTCCAAGATGAACTACCTGGACATTCTCGTGCGGGCTTCCATTGATGTAACTGCTGCCACCGAGAATATTAAGCTGCCCAATGCAGGCACTCAGGTTCGTGTGACTGTGTTTCCCTCAAAGACTGTAGCTCAATATTCAGGAGTACCTTGGTGGATCATCCTAGTGGCTATTCTTGCTGGGATTTTGATGCTTGCTCTATTAGTATTTTTACTATGGAAGTGTGGATTCTTTAAACGCTCTAGGTACGACGATAGTGTTCCCCGATACCATGCTGTAAGGATCCGGAAAGAGGAGCGAGAGATCCCAGATGAAAAATATAATGATAACCTTGAAAAAAAACAGTGGATCACAAGGTGGAATGAAAATGAAAGCTACTCCTAG

Related Sequences

bmy_09106T0 SequenceType object (3)

Length: 1083 aa      View alignments
>bmy_09106T0
MEQSPQLFQQQETRKHLSPAGDKRSAEARGSEALRRLLVGAPRAVALPLQKANRTGGLYSCDITSRGPCPRIEFDNDGRYKTCAHRYEKRQHVNTKQESRDIFGRCYVLSQNLRIEDDMDGGDWSFCDGRLRGHEKFGSCQQGVAATFTKDFHYIAFGAPGTYNWKGIVRVEQKNNTFFDMNIFEDGPYEVGGETDHDESLVPVPANSYLGLLFLTSISYTDPDQFVYKTQPPREQPDTSPDVMMNSYLGFSLDSGKGIVSKDEITFVSGAPRANHSGAVVLLKRDVKSAHLLPEHIFDGEGLASSFGYDVAVVDLNKDGWQDIVIGAPQYFDRSGEVGGAAYVYINQQGRWNNVKPIRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAPYDGMGKVFIYHGSANGINTKPTQILEGKSPFFGYSIAGNMDLDRNSYPDVAVGSLSDSVTIFRSRPVINIQQTITVTPNRIDLHQKMPCGAPSGICLKVKACFEYTAKPTGYNPSITIAGTLEAEKERRKSGLSSRVQFRNQGSEPKYTQELTLSRQKQKACMEETLWLQENIRDKLRPIPITASVEIQEPSTRRRVNSLPEVLPILNSNEPKSVHTDVHFLKEGCGEDNVCNSNLKLEYKFCTREGNQDKFSYLPIQKGVPELVLKDQKDIALEITVTNSPSNPKNPTKDGDDAHEAKLIATFPDTLTYSAYRELRAFPEKQLSCVANQNGSQADCELGNPFKRNSSVTFYLILSTTEITFDTTDLDVNLKLETTSNQDNLASITATARVVIELLLSVSGVAKPSQVYFGGTVIGEQAMKSEEEVGSLIEYEFRVINLGKPLKNLGTATLNIQWPKEISNGKWLLYLVKVESKGLEKIACQPQKEINFLKLKEAHNSRKKREIAERQTDDGRKFSLFAERKYQTLNCSVNVNCVNIGCPLRGLDSKASVVLRSRLWNSTFLEEYSKMNYLDILVRASIDVTAATENIKLPNAGTQVRVTVFPSKTVAQYSGVPWWIILVAILAGILMLALLVFLLWKCGFFKRSRYDDSVPRYHAVRIRKEEREIPDEKYNDNLEKKQWITRWNENESYS*