Part of scaffold_429 (Scaffold)

For more information consult the page for scaffold_429 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHDH ENSTTRG00000012277 (Bottlenosed dolphin)

Gene Details

choline dehydrogenase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011646, Bottlenosed dolphin)

Protein Percentage 95.43%
cDNA percentage 95.79%
Ka/Ks Ratio 0.12481 (Ka = 0.0204, Ks = 0.1638)

BT.18996 ENSBTAG00000010027 (Cow)

Gene Details

choline dehydrogenase, mitochondrial

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013227, Cow)

Protein Percentage 90.08%
cDNA percentage 91.96%
Ka/Ks Ratio 0.14718 (Ka = 0.046, Ks = 0.3124)

CHDH  (Minke Whale)

Gene Details

choline dehydrogenase

External Links

Gene match (Identifier: BACU005580, Minke Whale)

Protein Percentage 98.12%
cDNA percentage 98.48%
Ka/Ks Ratio 0.13953 (Ka = 0.0077, Ks = 0.0551)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1119 bp    Location:457727..461243   Strand:+
>bmy_09132
ATGTGGTGCATCCTTCAAGGCTGGAGGCGAGGGAGCCTTGGCCCATGGGGAGCCCTGGGGCAGCACTGGCCCCGGGGCATCCGTGCTCTGGCCAGCGAGCGCCCCCGGATTGGGGATGAGTACAGCCACGTGGTGGTGGGTGCGGGCTCCGCTGGCTGCGTGCTGGCCAGCCGGCTCACGGAGGACCCCGACAAGCGAGTGCTGCTGCTGGAGGCCGGGCCCAAGGATGTGTACGCGGGGAGCAAGCGGCTCCTGTGGAAGATCCACATGCCCGCGGCCCTCGTGGCCAACCTGTGCGATGACAGGTACAACTGGTGCTACTACACGGAGCCGCAGCCGGGCCTGGACGGCCGCGTGCTGTACTGGCCGCGCGGCCGGGTTTGGGGCGGCTCGTCGTCGCTCAACGCCATGGTCTACGTCCGCGGGCACGCCGAGGACTACGAGCGCTGGCAGCGGGAGGGCGCGGCGGGCTGGGACTACGCGCGCTGCCTGCCCTACTTCCGCAAGGCGCAGGCACACGAGCTGGGCGCCGGGAGGTACCGCGGCGGCGACGGTCCCCTGCGGGTGTCCCGCGGCAAGAGCGGCCACCCGCTGCACCGCGCATTCCTGGAGGCGGCGCAGGAGGCCGGCTACCCCCTCACCGAGGACATGAATGGCTTCCAGCAAGAGGGCTTCGGCTGGATGGACATGACCATCCACGAAGGCAAGCGCTGGAGCACGGCCTGTGCGTACCTGCATCCGGCACTGCGCCGCCCCACCCTCACGGCTGAGACCCGGACATTTGTGAGCAGGGTGCTGTTTGAAGGTACCCGTGCAGTGGGTGTGGAGTACATCAAGAACGGCCAGAGCCACAGGGCTTATGCCAGCAAGGAGGTGATTCTGAGTGGAGGTGCCATCAACTCTCCACAGCTACTCATGTTGTCAGGCGTGGGCAATGCAGACGACCTCAAGCAACTGGGCATCCCGGTGGTGTGCCACCTTCCTGGAGTTGGCCAGAACCTCCAAGACCACCTGGAGATATACATCCAGCAGGCGTGCACCTCCCCCATCACCCTCCACTCAGCACAGAAGCCCTTGAGGAAGGTCCGGATTGGCCTGGAGTGGCTCTGGAAGTTCACA

Related Sequences

bmy_09132T0 Protein

Length: 373 aa      View alignments
>bmy_09132T0
MWCILQGWRRGSLGPWGALGQHWPRGIRALASERPRIGDEYSHVVVGAGSAGCVLASRLTEDPDKRVLLLEAGPKDVYAGSKRLLWKIHMPAALVANLCDDRYNWCYYTEPQPGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQREGAAGWDYARCLPYFRKAQAHELGAGRYRGGDGPLRVSRGKSGHPLHRAFLEAAQEAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSTACAYLHPALRRPTLTAETRTFVSRVLFEGTRAVGVEYIKNGQSHRAYASKEVILSGGAINSPQLLMLSGVGNADDLKQLGIPVVCHLPGVGQNLQDHLEIYIQQACTSPITLHSAQKPLRKVRIGLEWLWKFT