Part of scaffold_422 (Scaffold)

For more information consult the page for scaffold_422 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RPAP1 ENSTTRG00000002796 (Bottlenosed dolphin)

Gene Details

RNA polymerase II associated protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002622, Bottlenosed dolphin)

Protein Percentage 97.44%
cDNA percentage 98.22%
Ka/Ks Ratio 0.47265 (Ka = 0.0134, Ks = 0.0283)

RPAP1 ENSBTAG00000001693 (Cow)

Gene Details

RNA polymerase II-associated protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002220, Cow)

Protein Percentage 90.36%
cDNA percentage 91.58%
Ka/Ks Ratio 0.3024 (Ka = 0.0556, Ks = 0.1838)

RPAP1  (Minke Whale)

Gene Details

RNA polymerase II associated protein 1

External Links

Gene match (Identifier: BACU008506, Minke Whale)

Protein Percentage 98.51%
cDNA percentage 98.95%
Ka/Ks Ratio 0.48256 (Ka = 0.008, Ks = 0.0166)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 6306 bp    Location:415752..441065   Strand:+
>bmy_09158
ATGCTGTCGAGACCAAAGCCAGGGGAGTCCGAGGTGGACCTGCTGCACTTCCAGAGTCAGTTTCTTGCAGCTGGTGCAGCCCCAGCAGTACAACTGGTGAAGAAAGGAAGTAGGAGTGGTGGTGATGCTAACCCGGACCGGCCTCCACTGCAGGATCATCGGGATGTGGTGATGCTGGACAATCTCCCAGATTTGCCCCCAGCTTTGGTTCCTGCTCCCCCAAAGAGAGCCAGGCCCAGCCCCGGCCATCCCCTGCCTGAACATGAGGACCCTGAAGAGAGGCTGAACAGGCATGATAAGCACATCACTGCTGTCTTGACTAAGATTATTGAACGAGATACAAGTTCAGTGGCTGTGAATCTGCCTGTGCCCTGTGGCGTTGCTTTCCCTCCTGTATTCCATCGCTCACAGGGGAGACAGGGGAAGCCAGCAACATCTGGTAAGAGAAGTATCTTTGCTCAGGAAATTGCAGCAAGGAGAGCATCTGAAGCCAAGGTCCCACCAGTTGGAGAAGTTGCATCTACCTTGGACCCACCAGAGGGTGCTGCAGCCTGTGAGGCACTCACACCTAGGGAGCAGGGCAGCCAGCTTCCATGGAACAGCTACAGCTTCCAGGGACCCCATCTGGTTACAGGGAAGGGGCTCAAGAGCCAGGAGGCTGAGCAGGAAGCCCAGACCATCCATGAGGAGAACGTAGCGAGACTGCAAGCCATGGCTCCGGAGGAGATCCTGCAGGAACAGCAGCGCTGCACCTGTGAGCAGGCAGAAGAGAAGGCCACAGGGGAGCAGAGGCCAGGAGGTCACTCTGCTGAGGTCACTGGAGAGGAGCCCATCATGCCAACTTCTGCCAGTGAGCCCAGGCAGGAAGATGAGCTGGAGCCAGGAGCCCCAGCTCTGGCACTGCCCGTGACTCCCCAGAAAGAATGGCTGCACATGGACACTGTGGAGCTGGAGAAGCTCCATTGGACCCAAGACCTGCCTCCACTCCGACGGCAGCAGACTCAGGAGAGGATGCAGGCCCGATTCAGTCTTCAGGGAGAGCTGCTGGCCCCCAGCGTGGACCTTCCCACCCATCTGGGCCTACACCACCATGGAGAGGAGGCGGAGAGAGCAGGGTACTCCCTTCAGGAGCTGTTCCACCTGACGCGCAGCCAGGTGTCCCAGCAGAGAGCACTAGCGCTGCATGTGTTGGCCCAGGTCATCGGCAGGGCCCAGGCTGGCGAGTTTGGGGACCGGCTAGTGGGCAGTGTCTTGCGCCTCCTTTTGGATGCTGGTTTCCTCTTCCTGCTGCGCTTCTCTCTGGATGACAGAGTGGATGGGGTCATCGCAGCTGCCGTCCGGGCTCTTCGGGCTCTGCTGGTGGCTCCTGGAGATGAGGAGCTCCTCGATAGCACCTTCTCTTGGTACCATGGAGCTTTGGTGTTCCCTCTGATGCCCAGCCAGGAGGACAAGGAGGACGAGGATGAGGATGAAGAGCCCCCAGCAGAAAAGGCAAAAAGGAAGAGCCCGGAGGAAGGAAACCGGCCTCCATCTGACCTGGCCCGACATGACGTCATCAAGGGGCTCCTGGCCACCAACCTGCTGCCTCGGCTACGCTACTTGCTGGAGGTGACCTGCCCAGGACCTTCTGTGGTCCTTGACATCCTGGCTGTGCTCATCCGCCTGGCCCGGCATTCCCTGGAGTCAGCCACAAGGGTCCTAGAGTGCCCTCGGCTGATAGAGACTGTGATTCAAGAGTTCCTGCCCACCAGCTGGTCCCCTATGGGGGTGAGGCCTACCCTCAGTCTACACAGAGTGCCCTGTGCTCCTGCCATGAAACTTCTTCGTGTCCTGGCCTCGGCTGGTAGGAATATTGCTGCCCGGCTGCTGAGTGGCTTTGATCTCCGGAGTCGCCTGTGCCGCTTTATAGCTGAGGCTCCCCAGGATCTGGCCTTGCCCCCAGAGGAAGCCGAGACACTGAGCACTGAGGCCTTCCGTCTGTGGGCCGTGGCAGCCTCCTACGGCCAGGGCGGTGACCTTTACAGGGAGCTGTACCCTGTGCTGACGCGAGCCCTGCAGGCTGTGCCGAAGGAGCTCAGCAGCCCCTCCCCTCAGCCCCTGGCTCTGCAGAGGACAGCCTCACTGCTCACTGTCCTCACCCAGCTGGCCCTAGCAGCCGGTAGCACCACCCCTGAGCCCAGAAGTGACTCTGCTGAGGCCAGTCTGTCGGCCACTCCTTCCTCAGTCACTTGGACGCAGGTGTCTGGGCTCCAGCCTCTCGTGGAGCCTTGTCTAAGACAGACCTTGAAGTTGCTGCCCAGACCTGAGATGTGGAGTGCCCTTGGCCCAGTGCCCACTGCCTGCCTGCTCTTCCTGGACGCTTACTACCAGGCCTGGAGCCAGCAGCCAGGCTTGTGCCCAGGGGATTGGCTTCAGGACATGGAGCGCCTGTCGGAGGAGCTGCTGCTGCCCCTGCTGAGCCAGCCCGCTCTGGGCAGACTGTGGGGTTCGCTGGGGTGCTGCTCCCCTCTCTGCAACCCACAGTCCTGTGCTCCGGCCCCTGAAGCTCTCTCCAGCCTCGTGTCACTGGGCTGCGCAGGAGGCCACCCTCCTCTCAGTCTGGCTGGCTCAGCCTCCCCCTTCCCATTCCTCACGGCCCTCCTCTCTCTTTTCAACACCCTGGGCTGGATCCACAAGGGGCTGTGTGGCCAGCTGGCTGCCGTATTGGCTGCCCCAGGACTGCAGAACTACTTCCTCCAATGTGTGGCTCCTGTGGCTGCTCCACACCTCACACCCTTCTCCACGTGGGCCCTGCACCATGAGTATCACCTGCAGTACCTGGCACTCGCCCTGGCCCAGAGAGCGGCGACACTCCAGCCAGTGTCAGCCACCAGTGCTGCCCTCTATCACGACATGGCCTTGGCCCTGCTGAGCCGGCTGCTGCCCGGAAGCGAGCACCTCGCCCATGAGCTACTGCTGAGCTGTGTGGAAAGAGCATCAGGGGGTCCGGAGGCAGCCGACTTCTCTGACCGGCTGTCCTTAGGGAGCGGCGGGGACCTTGGGCGTGGGCGAGGGACTCTGCTAGCTCAGGCCTGCCAGGACCTCCCCAGCATCCGCAGCTGCTACCTGACCCACTGCTCACTGGCCCGGGCCAGCCTGCTAGCCTCTCAAGCCTTGCACCGAGGGGAGCTCCAGCGAGTCCCAGCCCTGCTGCTCCCTGTGGCTAAGGAGCCCCTGCTGCCCACTGACTGGCCTTTCCTGCCATTGATTCAGCTCTACCACCGGGCCTCAGACAGCCCCTCGGGGCTCCCTCCTGCTGACACTGTGGGCACAGCCATGCGGGCCCTGCAGTGGGTGTTAGTCCTGGAGAGCTGGCGCCCCCAGGCCCTCCGGGCTGTGCCTCCTGCTGCCCGCCTGGCACGGCTCATGTGTGTGTTCTTGGTGGACAGTGAATTGTTCCGGGAGACCCCAGTACAACGTCTGGTGGCAGCCCTCCTGGCCCGGCTCTGCCAGCCTGAAGTCCTACCAAACCTCAACCTGGATTGCCCACTTCCTGGCCTGACGTCTTTCCCGGATCTCTATGCCAACTTCCTGGAGCATTTTGAGGCTGTGTCTTTTGGGGACCACCTCTTTGGGGCTCTGGTTCTCCTCCCCCTGCAGCGTCGGTTCAGCGTCACCTTGCGCCTTGCCCTCTTTGGGGAGCACGTGGGAGCCTTGCGAGCTCTGGGCCTGCCTCTGACCCAGTTGCCTGTGTCCCTGGAAAACTACACAGCGCCTCCTGAAGACAACCTGGCCCTCCTTCAGCTCTACTTCCGGGCTCTGGTTACTGGTGCGCTCCAATCACGCTGGTGCCCTGTGCTCTATGCTGTGGCCGTGGCTCATGTCAACAGCTTCATCTTCTGCCAGGACCCAAAGAGCTTGGATGAGGTAAAGGCTGCCCGCAGGAGCATGTTGCAGAAAACTTGGCTGCTGGCAGATGAGGGTCTTCGGCAGCACCTTCTCCACTATAAGCTTCCTAATTCTGCCCTTCCAGAGGGTTTTGAGCTGTATCCCCAGTTGCCCTCTCTGCGTCAGCAGTACCTCCAGAAACTGATCTCAGGGGTGCTCCAAAATGGGGTTTCAGAGACCTATAAGAAGTTGTGCACAGAGTTGACGCAGGCAACGGAATTGTTCGAGGTGAACCCTGAGATCCTTCGCATCCTGGGGTCTGAGGTGGGAGTGGCCAGGCCGGCTTTAGGACCCAGCGGTCTCCAGCGAGCGACTGGACACTCCTATAAGCGGCAGTCTGGGCTGAAGTCGCAAGGTCTGACTCTGCAACTCTGGCTGCAGTGGGCCAGTCTGCTCAGCCGGCTGCTGCTGTGGCTCAGAGCCATGGGTGCCATTCTCTGCTCCAGCTTGGGGTCCCAGGCACCTTTTCCCCCATCCTCGCCCTTGCCCCTGCCAGTTCCAAGCCCCTGGGACCTGAACATCACCACACCGCCTAGCCGCTTTGAGCCAGCCTCTCCCCTAATTCCCCCAGGGGCATTGGCTGTTCTCCACCTGCAGGGCCAGCAGCTGACGCGGGCCCACACAGTGTGGCCGGGACTACACCGGCAGCAGTGTGGTGGTGACAGTGGGGCCGCCGGGCCTCTGAAAGGCGTGCAGTTGTGGGCGCGGGGCGCCGGCCAGTATCTGATCTCAGCCTATGGAGCCGCGGGCGGCAAAGGTGCCAAGAACCACCTGTCACCGGCGCCTGGAGTCTTCCTCTCCGTCGTTTTCCCCCTTGGTCGCGGGGAGCTGCCTTACATCCTCGTAGGGCAGCAGGGAGAGGACGCCTGTCCGAGGGTAAGCGGAGCCAGTGAGAGGGGGACGGCTCAAGCGCCCCAGGGCGAGGGCTGGGTGGAAGGAGAGGGCGCTCCTGGGGTTAAGACCTCAGCACTGAGAAGGGAGGGTCCCGGACCCCCGCTGATTCCGTCCCGGGCGCCCGCCACGGAGCCAGGAGAGCCAGCTCGTTCTGCCTCGGAGAGTCTCCGGCCGCTGAGGAGCACGCGGCGACGGAGGGGATCAGAGGGGTTCCGGGGTCGCGGAGCTGGGCAGGAGTCGGAGCGGATGGGGGTTGCCACCGCCGTCTTTCGGGTACTTGCTTGCCTCGGCGCGAGCCGCGCCCGCCTCCAGCGCTCAGCGTTGAGGTGGCAAACCTTCCCGCGGGCGCGCACGCACACGAGCTTCTTGGCGTCCCCAGAGCCCTGGGCCTGGCTGGGGGCCCCTTCGCTTACTCTAGTCCCCGGGGCGGGGGCCCTCACCCAGCGCCCGGGTCGTCGTCGCTCGACGGCTAGAGGGCGCGCCCCGGAACGCTGCTGCCGCCTGCGCGCCCGCGAGCTGGAGCCGCTGCTGGTGGCAGCCGGAGGAGGCGGTCGGGCGTACCTGAGGCGGCAGGACCGAGGCCGGACTCACGCCACCCCCGAAAAACTGCAGAACCGCTCGGCAGCGCCGGGAAGCAGCGGGAGAGGCGGGGCGGCGGGTGAGGGCGCGGGCTGCGGCGGGGAGGAGGCCGTGCTCCTCCTCCCCGCGGCCGTCCGTCCCGCGGTCTCTCTGCAGATGGAGGGGACGGCTGGACGTCGCGGGCCCCCTCTCCGCCGGCCGGCCGCTCACCGCGGGAGGGGGCGAAGGGTGGCCAGGGCTGCAGGGAGGCCTGGGCTACGCTTGGCTGGGCCTCAGCCGGCGGCTTCAGGGGAGACGGCGGCGGCCACCCGGGTAGGGGGCGATGCCTCAGAGACTGACATCCTCTGGGCTGATGGGGAAGATGGGGTATCCTTCATACACCCCAACAGAGAGCTCTACTTGCAGCCTCTGCCAGTCGTGGAGAGCCATGGAGAGGTGGAGATTCAATTATACCTCAATCGTGGTCGGTCATTGCCTTTTGAAAATCTGCTAATGGCAGGCAGAGCTCCAGTTGGCCAGATGCATACCTGCCCACCCCTCAGACCCTTTGATTCTGATGGTGGCTGTGATGTTGATCTTGACACTGAGACTCCCTATGTGAACCATAAGAAGTGGCAGGGCCTGTGGTGGATGAGGCTGCCAGGCCCTGAGCTCCAGCTGAGCAAGTTCACCTCTACCATCGGACAACCCCCAACCCCTACTACTTCCAGAGCCCTGGGCCATGGTGCCTTTGGAGAGGTCTATGAGGGACTGGTGATTGGCCTTCCTGGGGACCCCAGCCCCCTGCAGGTGACTGTCAAGGACCAGCTGGATTTCCTCATGGAGACACTATCATCAGGTACACCTGGGGCCAGGGGCAGGCATGGAAGATGGGAGGAAGGCACCCAGAACTGCCTGCACAAATAG

Related Sequences

bmy_09158T0 Protein

Length: 2102 aa      View alignments
>bmy_09158T0
MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGSRSGGDANPDRPPLQDHRDVVMLDNLPDLPPALVPAPPKRARPSPGHPLPEHEDPEERLNRHDKHITAVLTKIIERDTSSVAVNLPVPCGVAFPPVFHRSQGRQGKPATSGKRSIFAQEIAARRASEAKVPPVGEVASTLDPPEGAAACEALTPREQGSQLPWNSYSFQGPHLVTGKGLKSQEAEQEAQTIHEENVARLQAMAPEEILQEQQRCTCEQAEEKATGEQRPGGHSAEVTGEEPIMPTSASEPRQEDELEPGAPALALPVTPQKEWLHMDTVELEKLHWTQDLPPLRRQQTQERMQARFSLQGELLAPSVDLPTHLGLHHHGEEAERAGYSLQELFHLTRSQVSQQRALALHVLAQVIGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRVDGVIAAAVRALRALLVAPGDEELLDSTFSWYHGALVFPLMPSQEDKEDEDEDEEPPAEKAKRKSPEEGNRPPSDLARHDVIKGLLATNLLPRLRYLLEVTCPGPSVVLDILAVLIRLARHSLESATRVLECPRLIETVIQEFLPTSWSPMGVRPTLSLHRVPCAPAMKLLRVLASAGRNIAARLLSGFDLRSRLCRFIAEAPQDLALPPEEAETLSTEAFRLWAVAASYGQGGDLYRELYPVLTRALQAVPKELSSPSPQPLALQRTASLLTVLTQLALAAGSTTPEPRSDSAEASLSATPSSVTWTQVSGLQPLVEPCLRQTLKLLPRPEMWSALGPVPTACLLFLDAYYQAWSQQPGLCPGDWLQDMERLSEELLLPLLSQPALGRLWGSLGCCSPLCNPQSCAPAPEALSSLVSLGCAGGHPPLSLAGSASPFPFLTALLSLFNTLGWIHKGLCGQLAAVLAAPGLQNYFLQCVAPVAAPHLTPFSTWALHHEYHLQYLALALAQRAATLQPVSATSAALYHDMALALLSRLLPGSEHLAHELLLSCVERASGGPEAADFSDRLSLGSGGDLGRGRGTLLAQACQDLPSIRSCYLTHCSLARASLLASQALHRGELQRVPALLLPVAKEPLLPTDWPFLPLIQLYHRASDSPSGLPPADTVGTAMRALQWVLVLESWRPQALRAVPPAARLARLMCVFLVDSELFRETPVQRLVAALLARLCQPEVLPNLNLDCPLPGLTSFPDLYANFLEHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALGLPLTQLPVSLENYTAPPEDNLALLQLYFRALVTGALQSRWCPVLYAVAVAHVNSFIFCQDPKSLDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSALPEGFELYPQLPSLRQQYLQKLISGVLQNGVSETYKKLCTELTQATELFEVNPEILRILGSEVGVARPALGPSGLQRATGHSYKRQSGLKSQGLTLQLWLQWASLLSRLLLWLRAMGAILCSSLGSQAPFPPSSPLPLPVPSPWDLNITTPPSRFEPASPLIPPGALAVLHLQGQQLTRAHTVWPGLHRQQCGGDSGAAGPLKGVQLWARGAGQYLISAYGAAGGKGAKNHLSPAPGVFLSVVFPLGRGELPYILVGQQGEDACPRVSGASERGTAQAPQGEGWVEGEGAPGVKTSALRREGPGPPLIPSRAPATEPGEPARSASESLRPLRSTRRRRGSEGFRGRGAGQESERMGVATAVFRVLACLGASRARLQRSALRWQTFPRARTHTSFLASPEPWAWLGAPSLTLVPGAGALTQRPGRRRSTARGRAPERCCRLRARELEPLLVAAGGGGRAYLRRQDRGRTHATPEKLQNRSAAPGSSGRGGAAGEGAGCGGEEAVLLLPAAVRPAVSLQMEGTAGRRGPPLRRPAAHRGRGRRVARAAGRPGLRLAGPQPAASGETAAATRVGGDASETDILWADGEDGVSFIHPNRELYLQPLPVVESHGEVEIQLYLNRGRSLPFENLLMAGRAPVGQMHTCPPLRPFDSDGGCDVDLDTETPYVNHKKWQGLWWMRLPGPELQLSKFTSTIGQPPTPTTSRALGHGAFGEVYEGLVIGLPGDPSPLQVTVKDQLDFLMETLSSGTPGARGRHGRWEEGTQNCLHK*