Part of scaffold_422 (Scaffold)

For more information consult the page for scaffold_422 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RTF1 ENSTTRG00000002792 (Bottlenosed dolphin)

Gene Details

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002618, Bottlenosed dolphin)

Protein Percentage 99.85%
cDNA percentage 99.25%
Ka/Ks Ratio 0.02128 (Ka = 0.0006, Ks = 0.0305)

RTF1 ENSBTAG00000001671 (Cow)

Gene Details

RNA polymerase-associated protein RTF1 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002191, Cow)

Protein Percentage 99.7%
cDNA percentage 96.92%
Ka/Ks Ratio 0.01191 (Ka = 0.0014, Ks = 0.1162)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2076 bp    Location:503487..459781   Strand:-
>bmy_09160
ATGGTAAAGAAGCGGAAAGGCCGCGTTGTGATCGACTCAGACACGGAAGACAGCGGCAGCGACGAGAACCTGGATCAGGAGCTCTTGTCCCTGGCAAAGCGGAAACGAAGTGACTCTGAAGAGAAGGAGCCGCCTGTTAGTCAGCCTGCAGCCTCCTCAGACTCGGAGACGTCTAACAGTGATGATGAGTGGACTTTTGGGAGCAATAAAAATAAGAAGAAAGGAAAAGCCAGAAAAATAGAGAAGAAAGGAACCATGAAGAAACAGGCCAATAAAACTGCTTCCTCAGGCAGTTCGGACAAAGACAGTTCAGCTGAGAGCTCAGCCCCTGAGGAAGGTGAAGTGTCAGATTCTGACAGCAACAGCTCCTCCTCCAGTTCAGATTCAGACTCTTCCTCAGAAGATGAGGAATTCCATGATGGCTATGGAGAAGACCTCATGGGAGATGAGGAAGACAGGGCCCGTCTGGAACAGATGACAGAAAAGGAGAGAGAGCAAGAACTGTTCAACCGCATAGAGAAGAGGGAGGTGTTAAAAAAAAGATTTGAAATCAGGAAAAAACTGAAAACAGCCAAAAAGAAAGAAAAGAAAGAAAAAAAGAAAAAGCAAGAAGAGGAGCAGGAAAAGAAGAAACTGACACAGATTCAAGAATCTCAGGTAACATCCCATAACAAGGAACGACGTTCCAAACGGGATGAGAAACTAGATAAGAAATCTCAAGCCATGGAGGAGCTAAAAGCAGAGCGAGAAAAACGGAAGAACAGAACAGCTGAGCTCCTCGCCAAGAAACAGCCATTAAAAACCAGTGAGGTGTACTCTGATGATGAGGAGGAGGAGGAAGATGACAAGTCCAGTGAAAAGTCAGACCGCTCATCCCGAACATCGTCATCTGATGAAGAAGAGGAGAAAGAAGAGATCCCTCCAAAATCACAACCGGTCTCCTTACCGGAGGAATTGAATCGGGTTCGATTATCACGGCATAAGCTGGAACGTTGGTGTCACATGCCCTTCTTTGCTAAAACTGTCACAGGATGTTTTGTACGGATTGGCATTGGAAACCACAACAGCAAACCAGTTTACCGGGTTGCTGAGATCACGGGCGTAGTGGAAACCGCCAAAGTTTACCAGCTTGGTGGCACCAGAACAAACAAAGGGCTACAGCTACGGCACGGCAGTGACCAGCGAGTGTTCCGCCTAGAGTTTGTCTCAAACCAGGAGTTCACTGAAAGCGAATTCATGAAGTGGAAAGAAGCGATGTTCTCTGCTGGCATGCAGTTGCCCACTCTGGATGAAATCAATAAGAAGGAATTATCTATTAAAGAAGCTCTTAATTATAAATTCAATGACCAGGACATTGAAGAGATTGTAAAAGAGAAAGAAAGATTCAGGAAAGCTCCACCCAACTATGCTATGAAGAAAACGCAGCTCCTAAAGGAAAAGGCCATGGCCGAGGACCTGGGGGATCAGGACAAGGCCAAACAAATCCAAGACCAGCTGAACGAGCTGGAGGAACGAGCAGAGGCCCTGGACCGCCAGCGGACCAAGAACATATCTGCTATCAGTTACATCAACCAGCGGAACCGGGAGTGGAACATTGTGGAGTCTGAGAAGGCCCTTGTGGCTGAAAGTCACAACATGAAAAACCAACAGATGGATCCTTTTACCCGGCGACAGTGTAAACCTACCATCGTTTCTAATTCCAGAGACCCAGCTGTTCAAGCTGCCATATTGGCCCAGCTGAACGCAAAATACGGTTCTGGAGTGTTACCAGATGCTCCAAAGGAAATGAGCAAGGCAAGTATACTACTGGAGCTCGGCCGCTGGCCCGGACACCAGAGCAGGCACTTCCTGGGTCGGGGTCAGGGAAAGGATAAAGATTTGAATTCTAAGTCAGCCAGTGACCTCTCAGAAGACTTGTTCAAAGTACATGATTTCGACGTGAAGATTGATTTACAAGTTCCCAGCTCAGAGTCAAAGGCTTTGGCCATCACCTCCAAGGCTCCGCCAGCCAAGGATGGAGCTCCAAGGAGATCTCTGAACTTGGAAGACTACAAAAAACGACGAGGGCTTATTTGA

Related Sequences

bmy_09160T0 Protein

Length: 692 aa      View alignments
>bmy_09160T0
MVKKRKGRVVIDSDTEDSGSDENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSNSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKKRFEIRKKLKTAKKKEKKEKKKKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELLAKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLNELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCKPTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKASILLELGRWPGHQSRHFLGRGQGKDKDLNSKSASDLSEDLFKVHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI*