Sequence detailsbmy_09321 (Coding sequence)

Part of scaffold_450 (SequenceType object (1))

For more information consult the page for scaffold_450 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TARBP1ENSTTRG00000008707 (Bottlenosed dolphin)

Gene Details

TAR (HIV-1) RNA binding protein 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000008263, Bottlenosed dolphin)

Protein Percentage 85.5%
cDNA percentage 87.78%
Ka/Ks Ratio 0.57547 (Ka = 0.0758, Ks = 0.1317)

TARBP1ENSBTAG00000004517 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000005936, Cow)

Protein Percentage 84.26%
cDNA percentage 87.48%
Ka/Ks Ratio 0.38601 (Ka = 0.1014, Ks = 0.2627)

TARBP1 (Minke Whale)

Gene Details

TAR (HIV-1) RNA binding protein 1

External Links

Gene match (Identifier: BACU004999, Minke Whale)

Protein Percentage 91.02%
cDNA percentage 93.19%
Ka/Ks Ratio 0.71621 (Ka = 0.0658, Ks = 0.0918)

Additional orthologs identified in other species via the OPTIC pipeline.

TARBP1 (Human)   Gm17296 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3618 bp    Location:264169..201643   Strand:-
Raw sequence 
>bmy_09321
CCGGACGCCCGGCGCTGCTGGCGCTTCTGGAGGACGGTGCAGGCGGGGCTGACCCGGGCCGAGGACGCCCTGACGCGCAAGCGGGCGCGCTACCTACTGCAGCGGGCGGTGGAGGTGTCGGCGGAGTTGGGGGCCGACTGCGCGTGCGCCCCCCAGGAAGGAACCGGCCCAAGTCTGTTTTGGTGGTCTGAGAAGAAAAAAGATGAGCTTCTAAAGTTTTGGGAAAACTATATTTTAATTATGGAAACTCTTGAAGGAAATCAGATACATGTTATAAAGCCAGTTTTACCAAAGCTAAACAATCTGTTTGAATATGCAGTGTCAGAGGAAAATGGATGTTGGCTCTTTCACCCATCCTGGCATCTGTGTATTTATAAAAGAATGTTTGAAAGTGAAAATAAAATCCTGACCAAAGAAGGCGTTACCCATTTTTTGGAGCTGTATGAAACAAGGGTTCTTCCATTTTCAGCAGAATTTTCTGAGGTGAACACTGACGTAGGTATAGTAATTTACCTCTCGTTTAGAGTTTATTATTGGGCCATTAATGGATGCACTTTCAGAGAGCTCTCTATACAGCAGGTCCCCAGGCCAGCTGATAGGAAGTGGTTCTCCATTGGGATTGAAATTACAGAAGTTCTTAGTCACTTACATTTCTCTTCTTCCAGAAGAAATAAAGAGGACGTTCTTCAGTGCACCATGATCACACATCAGATCCTGCTGCGAGGGGCAGCACAGTGCTATCTCCTTCAGACGGCCATGAATCTGGTAGACGTGGAGAAAGTGTCCCTCTCTGATGTCTCATCCCTTGTCATGTCAGTGAGACAAGAGGAGTCCTTCGGACGAGGAACTTCATTGTGGACAGAGCTCTGTGATTGGCTGCGTGTCAATGAAAGCTGTTTTAGGCGACCCTCAACTTGTAGCTCCATTGGACTTCAGGAGACATCCTCTTTAAATGCTTATGTAAAGAACCTAGTCCAAGAGTATATTAAGTCACCTGCCTGGGAAGGAGGAGAAAACTGCTGTATGCCTGATTGGCTTGAAGCCAAGCTTGTTGCTATGATGGTCTTGCTGGCCATAGATGTGGAAGGAATGAAGAGTCAATATAGTGAAAAGCGGAGGACACAGAATGTATTAAGGATATTCTTAGATCCTCTCCTGGATGCCCTTGTGAAGTTTGGTACAAATGCCTACATGCCCTTGCTGAAAACTGACAGATGCCTGCAGTTGCTGTTGAAGTTACTGCACACTTGCTTGTTGAAAGGTTCCAGTACCCAAGATGGTGAGCTTTTACTAGACTGTCGGGTGTACTTTGTACCAAATAAACTTATTTCTATCATTTTAGTTGCGCCTACAGATGAGGTTTCAGATCTGGATCGTTGCCATTTGTACCTGATGGTATTAACTGAACTTATAAATCTCCACTTGAAGGTTGGATGGAAAAGAGGGAACCCTATTTGGAGAGTTATTTCTCCTTTGAAAAACGCATCCATTCGGCATCTTCARGAGATGGACCGTGGGCAGGAACCGACACTGGGTAGACAGATTCAGAGAGTTGTTAGTATGGCTGCCTTGGCCATGGTGTGTGAGGCCATTGACCAGAAGCCAGAGCTACAGCTGGACTCTCGGGATGCGGGAGCCACGGAAAGGTTCCTCTCCTCTCTCCAGCTCAATCAGACGCTGCAGAAGCCCCACACAGAGGAGGACAGCAGTTTTTTTGAAGAGTCACCATCTTCCCAAGGATGGGGGAAAATAGTTGCACAATATATTCATGATCAGTGGGTCTGCCTCTCTTTCTTGTTGAAAAAATATCACACCCTTATACCAGCCTCAGAGGATGAAATTCTGGAACCCATTCTACCTGCTGTTCAAATGCCAATAAGGACTTTGCAGTCCGCACTAGAAGCCCTCACAATTCTTCCTTCTGATCAAGTTTTACCTGTGTTCCACTGCATGAAAATTTTGGTTCCCAAGATTATGTACAGGATAATTGAAATGTCTACTATAAAAACTGGAGTCTTCAATATATTGATAAGTTATTGCTGCAAATCTTGGATAGTTTCTGCTTCAAATGTGTCTTTATCTACTGCTAAAAATTACAGCGAACTTGTCTATGAGGCGTGTATATTTGGAACAGTGTTTCGGCGTGATCAAAGACTTATTCAGGATGTACAGACCTTCATAGAAAATCTTGGGCATGAGTGTGCAGCGAACATGGTTATTGAAAATACTAAAAGAGAGGACCATTATGTGAGAATTTGTGCTGTCAAATTCCTGTGTTTATTAGATGGCTCAAATATGTCTCATAAGTTGTTTATGGAAGATCTTGCAATCAAGCTATTAGAAAAAGATGAATTGGTGTCCAAGTCAAGAACTCGATACTATGTGAATTCTCAACAACATCGAGTGAAAAACCGAATATGGCAGACTCTCCTTGTACTTCTACCCAGATTCGATCAGGGTGAAGAAAACCTTAAAACAAGCATTTGTACATTTTTATCAGCTTTGTCGCATTTGGACATCATTACTGAAAATATTCCAGAAAAGAAACTAATTCTGAAGCAAGCCCTTATTATCGTRCTGCACTGGTGTTTTAATCACAATTTTAGCATTCGACTGTATGCCTTAGTTGCTCTTAAGAAAATCTGGAGCATGTGTAAGACATTGCACATTGAAGAACTTGATGCTTTGACTTCCATTATTGAATCCAGTCTGAATCAAGTGGAAAACATGCATGGAGCAGGGAACGCGAAGAAGAATTGGCAACGGATCCAGGAGCATTTCTTTTTTGCAACGTTCCACCCACTGAAGGATTACTGTCTGGAGACCATATTTTACATCCTTCCACGCCTTTCCGGCCTTGTTGAGGACGAATGGATTGCCATTGGTAAATTTACCAGGTTCACTGACATTCCTTTAGATGCAGGATTTCAGTGGTACCTTTCTCCAACTCAACTTTGTGAACTAAAACCAGGTGACTGGTCCCAGCAGGACATAGGTTCTAACTCAGGCGAAGCAGATAACGAGTCAGAGTGGAGTGATGTTCAGAAGAAGATTATCCCATGGAGAAACAGTGTTCCCGACTTAGACCTGGAGCTGGTATTTCAGGATCGTGCGGCCAAACTTGGAAAGTCCCTCAGCAGACTGATTGTCGTGGCCTCACTCATTGACAAACCAACCAACTTAGGAGGGCTGTGCCGGACCTGTGAGGTGTTCGGGGCCTCGGCGCTCGTGGTCGGCAACCTTCAGTGCATCAGAGACAAGCAGTTTCAGCACCTCAGCGTTTCAGCCGAACAGTGGCTTCCTTTGGTGGAGGTAAAACCACCTCAGCTGATCGATTATCTGCAACAGAAAAAAGCAGAAGGTTACACCATCGTGGGTGTGGAACAGACTGTGAAAAGTTTAGACCTAACCCAGTACTGCTTCCCTGAGAAGTCTCTACTCTTGTTGGGAAATGAACGGGAAGGAATTCCAGCAAATCTGATCCAGCAGTTGGACGTGTGTGTGGAAATTCCTCAGCAGGGCATCATCCGCTCCCTCAACGTCCACGTGAGTGGAGCTCTGCTCATCTGGGAGTACACCAGGCAGCAGCTGCTGAAGCAGGGGGGCCCCGGGTCCTGA

Related Sequences

bmy_09321T0 SequenceType object (3)

Length: 1206 aa      View alignments
>bmy_09321T0
PDARRCWRFWRTVQAGLTRAEDALTRKRARYLLQRAVEVSAELGADCACAPQEGTGPSLFWWSEKKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFEYAVSEENGCWLFHPSWHLCIYKRMFESENKILTKEGVTHFLELYETRVLPFSAEFSEVNTDVGIVIYLSFRVYYWAINGCTFRELSIQQVPRPADRKWFSIGIEITEVLSHLHFSSSRRNKEDVLQCTMITHQILLRGAAQCYLLQTAMNLVDVEKVSLSDVSSLVMSVRQEESFGRGTSLWTELCDWLRVNESCFRRPSTCSSIGLQETSSLNAYVKNLVQEYIKSPAWEGGENCCMPDWLEAKLVAMMVLLAIDVEGMKSQYSEKRRTQNVLRIFLDPLLDALVKFGTNAYMPLLKTDRCLQLLLKLLHTCLLKGSSTQDGELLLDCRVYFVPNKLISIILVAPTDEVSDLDRCHLYLMVLTELINLHLKVGWKRGNPIWRVISPLKNASIRHLQEMDRGQEPTLGRQIQRVVSMAALAMVCEAIDQKPELQLDSRDAGATERFLSSLQLNQTLQKPHTEEDSSFFEESPSSQGWGKIVAQYIHDQWVCLSFLLKKYHTLIPASEDEILEPILPAVQMPIRTLQSALEALTILPSDQVLPVFHCMKILVPKIMYRIIEMSTIKTGVFNILISYCCKSWIVSASNVSLSTAKNYSELVYEACIFGTVFRRDQRLIQDVQTFIENLGHECAANMVIENTKREDHYVRICAVKFLCLLDGSNMSHKLFMEDLAIKLLEKDELVSKSRTRYYVNSQQHRVKNRIWQTLLVLLPRFDQGEENLKTSICTFLSALSHLDIITENIPEKKLILKQALIIVLHWCFNHNFSIRLYALVALKKIWSMCKTLHIEELDALTSIIESSLNQVENMHGAGNAKKNWQRIQEHFFFATFHPLKDYCLETIFYILPRLSGLVEDEWIAIGKFTRFTDIPLDAGFQWYLSPTQLCELKPGDWSQQDIGSNSGEADNESEWSDVQKKIIPWRNSVPDLDLELVFQDRAAKLGKSLSRLIVVASLIDKPTNLGGLCRTCEVFGASALVVGNLQCIRDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTVKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLKQGGPGS*